Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00532 ATGGCATCTCAATCCTCTAGCAACACTTCCACTTCACAACATCAAGATGTgaacaaacaaaatcaacatcCAAACTCTGAGTCAAACAAAATTGACTTCGTGAAATTATCGAAAGATGATTTGGTTCGTGGGTCTAAAGTGCAAGAGCACAACTTTTTGAACCCTATTCAAGTTGGTTCTTCATCTAGTTTTCCTAATAACAACAACGAAGGAAAAGATGAGAACAACAATGAAAAGAAAACTTCTGATTCAAAGTTTTATTCATGCAACTACTGTAAGGGTCAATATTCTTCCTTACAAGCGTTAGGAGGACACCAGAATGCGCACAAAGCAGAACGTGCCATACAAATGAAACTAATTAAACAAAGGTATGAAGGTAGTTCATCTGATCTAGGGCAACCCCGTTTTAACCCGTATTTAAATTATCCTATTACTCCTTTTACAACTTATAACTATAGGCCACTTGGAGGGCCACTTGGAGTTAGAATGGATTCAATGATTCAAAAATCACCTTATTTTAGCCCTAGGCCGTTTGGTTATGGTGGTTTGCGTTTGCATGATATATTCAACCCTTCTCTTCTTAGCATGAGAAATAATAGTGGTGCTGCAAGTCTAGGTATTGGTGGTGCAACTACTTCAAGAATCGAAGATCAAGTTGGTACAAGTAATAGAAATGATGCTATTCTAAGAATTGGAGAATCTTCTACAAATATTGTGGCTCCTACAAATATTGTTGCAAACATTGTAGAAGAACCATCTGATGATTCTGAATCTTCTGGACTCGATCTGTCACTTAAGctttaa 804 0.3607 MASQSSSNTSTSQHQDVNKQNQHPNSESNKIDFVKLSKDDLVRGSKVQEHNFLNPIQVGSSSSFPNNNNEGKDENNNEKKTSDSKFYSCNYCKGQYSSLQALGGHQNAHKAERAIQMKLIKQRYEGSSSDLGQPRFNPYLNYPITPFTTYNYRPLGGPLGVRMDSMIQKSPYFSPRPFGYGGLRLHDIFNPSLLSMRNNSGAASLGIGGATTSRIEDQVGTSNRNDAILRIGESSTNIVAPTNIVANIVEEPSDDSESSGLDLSLKL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00532 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Tsu04g00532 267 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 267 - -
Tsu04g00532 267 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tsu04g00532 267 PANTHER ZINC FINGER PROTEIN JAGGED 11 267 IPR045320 GO:0003700
Tsu04g00532 267 MobiDBLite consensus disorder prediction 1 31 - -
Tsu04g00532 267 Pfam C2H2-type zinc finger 87 111 - -
Tsu04g00532 267 SUPERFAMILY beta-beta-alpha zinc fingers 83 115 IPR036236 -
Tsu04g00532 267 MobiDBLite consensus disorder prediction 52 71 - -
Tsu04g00532 267 MobiDBLite consensus disorder prediction 1 34 - -
Tsu04g00532 267 MobiDBLite consensus disorder prediction 52 82 - -
Tsu04g00532 267 Gene3D Classic Zinc Finger 68 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00532 Tsu-Chr4 4929715 4930518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00532 8 267 C2H2 Transcription Factor Family AT5G10970 28.148 2.25e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00532 - - mtr:MTR_3g011970 236.498