Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00531 ATGCAAGAGCACAACTTTTTTAGCCCTGTTCAAGTTGGTTCTTCATCTTATTTTCCTAATATCAACAATGAAGGAAAAGATAagaacaacaataaaaataatgattctGATTcaaattcttattcttattcaTGCTCATACTGCAAGGGTCAATATTCTTCATTACAAGCATTAAAAGGTCACCAAAATGCTCACAGAGCAGAACGTGCGTTACAAAAGCAACTAATTAATCAAAGATACGATGGTGGTTCTTTTGGTGTAGGGCAACTTCGTTTTAACCCTTATTTAAATTATCCGATTACTCCTTTTACACCTAATCCTATCGCACCTTTTACACCTTATCCTATTACTCCTTTTACACCTTATAACTATAAGCCACTTGGGATTAGAATGGAATCATTGATTCAAAAATCACCTTATATTAGCCCTAGGAATGGCCATGGTGCTTTATGTTTGCAAGACATATTAAACCCAAATCTTGTTAGCTTGAGAAAAAATATTCAGTGCAGTAATAGTGGGGTTGCAAGTCTAGGTTTTGGTGGTGCAACTACTTCAAGAACTGAAGATGAAGTTtgtagaaataataaaaatggtgCTATTATGAAACTTGGAGAATCTTCGACAAATATTGTGGCTTCTACTTCTACCATGGATGATATTCGTAATACGAAGTCGACAAATATTGAAGAAGAAATCTCTGATGCTGAATCTTATGTGCTTGATTTGTCACTTAAACtttaa 741 0.3212 MQEHNFFSPVQVGSSSYFPNINNEGKDKNNNKNNDSDSNSYSYSCSYCKGQYSSLQALKGHQNAHRAERALQKQLINQRYDGGSFGVGQLRFNPYLNYPITPFTPNPIAPFTPYPITPFTPYNYKPLGIRMESLIQKSPYISPRNGHGALCLQDILNPNLVSLRKNIQCSNSGVASLGFGGATTSRTEDEVCRNNKNGAIMKLGESSTNIVASTSTMDDIRNTKSTNIEEEISDAESYVLDLSLKL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00531 246 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Tsu04g00531 246 Gene3D Classic Zinc Finger 22 84 - -
Tsu04g00531 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Tsu04g00531 246 PANTHER ZINC FINGER PROTEIN JAGGED 109 246 IPR045320 GO:0003700
Tsu04g00531 246 PANTHER ZINC FINGER PROTEIN JAGGED 13 106 IPR045320 GO:0003700
Tsu04g00531 246 PANTHER ZINC FINGER PROTEIN KNUCKLES 13 106 - -
Tsu04g00531 246 PANTHER ZINC FINGER PROTEIN KNUCKLES 109 246 - -
Tsu04g00531 246 MobiDBLite consensus disorder prediction 17 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00531 Tsu-Chr4 4927039 4927779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00531 43 99 C2H2 Transcription Factor Family AT5G27880 42.373 5.21e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00531 - - mtr:MTR_3g011970 196.438