Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu04g00530 | ATGGCACATCAATCCTCTAGCAGCTCTTCCACTTCACAACAATTTCCAAACTCTAATCCAAGCAAGTCAATTGAAACTGTAAATCAATCCAAAGATGATTTGGTTCGTGGGTCTAAAGTGCAAGAGCACAACTTTTTTAGCCCTATTCAAGTTGGTTCTTCGTCTTATTTTCCTAATAACAACAATGAAGGAAAAGACGAGAACaacaatgaaaagaaaaattctgAATCGAAGTTTTATTCATGCAACTACTGCAAGGGCCAATATTCTTCTTTACAAGCCTTAGGAGGACACCAGAATGCGCATAAAGCAGAACGTGCATTACAAAagcaacaaatcaaacaaaagtaTGAAGGTGATAATTTAGATTTAGGGCAACCTAGTTTTAACCCTTATTTGAACTATCCTAACACTTCTTTTACACCTTATAACTATAGGCCACTAGGGATTAGAATGGAATCAATGATTCAAAAATCACCTTATATTAACCCTAAGATTGGTCATGGTGCTTTTACACCTTATAGGCCACTTGGAGTTAGAATGGAATCAATGATTCATAAATCACCTTATATTAGCCCTAGGGTTGGTCATGGTTCTTTGTGTTTGCATGATATATTACACCCTTCTCTTGCTAGCTTCAGAAATCATTTTCAAGGTAGTAATGGTGGGGTTGCAAGTCTAGGTATTGGTGGTACAAATAATCCAAATGCTGCTATTCTAAAGTTTGGAGAATCTTCTACAAATAATGTGGCTCTTAATTCTACCATGGATGACATTCCAAACTCAAACATTGAAGAAGAACCATCTGATGATTCCGAATCTTCTGGGCTTGATCTGTCTCTTAAGCTTTAA | 852 | 0.3509 | MAHQSSSSSSTSQQFPNSNPSKSIETVNQSKDDLVRGSKVQEHNFFSPIQVGSSSYFPNNNNEGKDENNNEKKNSESKFYSCNYCKGQYSSLQALGGHQNAHKAERALQKQQIKQKYEGDNLDLGQPSFNPYLNYPNTSFTPYNYRPLGIRMESMIQKSPYINPKIGHGAFTPYRPLGVRMESMIHKSPYISPRVGHGSLCLHDILHPSLASFRNHFQGSNGGVASLGIGGTNNPNAAILKFGESSTNNVALNSTMDDIPNSNIEEEPSDDSESSGLDLSLKL | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu04g00530 | 283 | MobiDBLite | consensus disorder prediction | 251 | 283 | - | - | |
| Tsu04g00530 | 283 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 82 | 102 | IPR013087 | - | |
| Tsu04g00530 | 283 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 108 | IPR036236 | - | |
| Tsu04g00530 | 283 | MobiDBLite | consensus disorder prediction | 43 | 64 | - | - | |
| Tsu04g00530 | 283 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 80 | 107 | IPR013087 | - | |
| Tsu04g00530 | 283 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
| Tsu04g00530 | 283 | Pfam | C2H2-type zinc finger | 80 | 104 | - | - | |
| Tsu04g00530 | 283 | Gene3D | Classic Zinc Finger | 63 | 126 | - | - | |
| Tsu04g00530 | 283 | PANTHER | ZINC FINGER PROTEIN KNUCKLES | 52 | 283 | - | - | |
| Tsu04g00530 | 283 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Tsu04g00530 | 283 | PANTHER | ZINC FINGER PROTEIN JAGGED | 52 | 283 | IPR045320 | GO:0003700 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu04g00530 | Tsu-Chr4 | 4922788 | 4923639 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu04g00530 | 69 | 187 | C2H2 Transcription Factor Family | AT5G25160 | 32.773 | 1.89e-11 | 60.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu04g00530 | - | - | mtr:MTR_3g011970 | 195.667 |