Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00529 ATGGCATCTAAAAGCTCTTCTAACAACAATGAAGGGACAAACGAGAACACAACTGAAGAGAATTTAACCAAAAGCCCTTCTAACAACAATGAAGGGAAAAATGAGAACACATCTGAAGAGAAGAATTCAAATTCAAGGTCTTTTTTATGCAACTATTGCCGAAGCAAATTTTCAACTCAGCAAGCGTTAGCAGGGCACCAAAATGCTCATAGGGCAGAACGTGCATTCGAAAAGCAACGTAAAGAAAGGTATGATGGTGAAACTTCAGGTTTAGGTTTAGTGCAACATCAATTTAACCCTAGTTTTAATTATTCGAGTAGTCTCTTTACCCCCTGTACCTATAGGCCACTCGGGGTTCGAATGGAATCAATGattcaaaaatcacattttgATAGCCCCGTGACTGGTCATGGTGCTTTGCGTTTGCAAGATATGTTAAACCCTTCCCTTGCTAGCTTCCGAAATAATATTGAGTTTCGTGGTACTAGAGGGGTTGGAGTTCAGGGTATTGATGGTGCAACTACTTCAAGGATTGAAGATGGTCCCAATAACCAAATTCATGATTTTCTAAAGCTTGTAGATTCTTCTACAAATGTTGCTACAAGTTCAAACGTTGAAGAAGAACCCTCTAATCCTGAATCTTCCGAGCTTGATTTAACGCTCAAGCTCTAA 672 0.3884 MASKSSSNNNEGTNENTTEENLTKSPSNNNEGKNENTSEEKNSNSRSFLCNYCRSKFSTQQALAGHQNAHRAERAFEKQRKERYDGETSGLGLVQHQFNPSFNYSSSLFTPCTYRPLGVRMESMIQKSHFDSPVTGHGALRLQDMLNPSLASFRNNIEFRGTRGVGVQGIDGATTSRIEDGPNNQIHDFLKLVDSSTNVATSSNVEEEPSNPESSELDLTLKL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00529 223 PANTHER ZINC FINGER PROTEIN JAGGED 26 223 IPR045320 GO:0003700
Tsu04g00529 223 MobiDBLite consensus disorder prediction 201 217 - -
Tsu04g00529 223 SUPERFAMILY beta-beta-alpha zinc fingers 45 77 IPR036236 -
Tsu04g00529 223 MobiDBLite consensus disorder prediction 201 223 - -
Tsu04g00529 223 PANTHER ZINC FINGER PROTEIN KNUCKLES 26 223 - -
Tsu04g00529 223 Gene3D Classic Zinc Finger 24 97 - -
Tsu04g00529 223 MobiDBLite consensus disorder prediction 1 33 - -
Tsu04g00529 223 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Tsu04g00529 223 MobiDBLite consensus disorder prediction 1 44 - -
Tsu04g00529 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00529 Tsu-Chr4 4918689 4919360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00529 18 82 C2H2 Transcription Factor Family AT5G01860 45.070 3.80e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu04g00529 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00529 - - mtr:MTR_7g022980 179.874