Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00528 atgatcaattCACTTTGTGGAAGTTCAAATTCCCACAAAGAAAAATGTCTTCAACCCACTTCATCAAATCATACAAATATACACTCAAAGAAAAATACCACAAATTCTAGTGATGATTTAGATCAAATTAATATTCTAACCCCACAAAGCTTAAACCTTCCATCACTCAAATTTGACTTAGATGGTGACGTGGAAGTCCAATCACCAGATAGTTCAATGTGGGAATCATTTTTTAATGACCATTTAGATATTAATAATGATTTTATGATATCTTCACCTATTAGAAATATTAACCCTAACTCACCACAAGCTTCTACTTACAATAATAATTGtagtaattataataataataactatggTCAAGGAATGCAAATTCAAACATTTTCACCACCTCGTTTTGGAGCattaaataataatcaacaaaaagGGAAAGGACTTAGTCCACTACATAGAGTTTTTAATTCACCAAATAATCAATATATGCAACATGTTGAAAATCTTTCTTTGCCAGCTATTGAAGAGTTCTTAGAAGATTATCAAGGTGATGTTGatttttcatcaacaaaaatttcatcttcttctgatCAATGTTTTGATATGGAAACACCAATTTCAACAATTTTGGATAGTTTATCAATgcaaaattcatcatcatcaaggTATTGTGGTTCTATTAGTGAAGAATCTTCTATTTTGCATGGTGGTAATTCCTCTCAAGATAATGATATTTATCATCAAATGGGATCTATGGCTAGTGCATCACTTTCACAAGCTTTACAACAAGAAAGGTATCAAGAGAAACATCAAAAATTGCAAGCACAACAACAGAGTCTAACAGTTCCTATTCCAATTGGAATTGAACAGGAACAAGACAGTGGACTTCAACTCGTGCACTTGCTTCTAGCTTGTGCTGAAGCAGTAGCAAAAGAAGAATACATGCTAGCAAAAAGGTACCTACATCAGCTCAATAGAGTGGTAACACCACTAGGTGACTCCATGCAACGTGTAGCTTCATGTTTTACAGAATCTCTAAGTGCAAGACTCGCTGCAACCCTAACAACAAAGACATCATCAAACAAAAAGTCAacaacaccatcatcatcatcatcctcttcatcaTCATGTTTCTCTAGCTTCCCATCAAACCCTATGGAAGTCCTAAAGATCTACCAAATCGTTTACCAAGCTTGTCCTTACATCAAATTTGCACATTTCACAGCTAACCAGGCGATTTTCGAGGCATTTGAGGCCGAAGAACGTGTCCATGTTATTGACCTAGATATTCTTCAGGGTTACCAATGGCCTGCTTTTATGCAGGCGTTGGCTGCACGGCCTGGCGGTGCTCCGTTTCTCAGGATCACCGGTGTAGGGCCGTGCATTGAAGCTGTTAGAGAAACTGGACGATGCTTAACCGATTTAGCTCATTCTCTTCGCATCCCCTTTGAGTTCCACGGCGTTGGAGAACAACTTGAGGATCTAAAACCGCACATGTTTCACCGCCATGTAGGAGAGGCGTTAGCGGTTAACACTGTTAACCGCCTTCACCGTGTTCCTGGAAATCATCTTGGGAACTTGTTGTCCATGATAAGGGACCAGGCACCGAACATAGTGACGCTTGTCGAGCAAGAAGCAAGCCATAATGGACCATACTTTTTGGGCCGATTTCTCGAGGCCTTACATTACTACTCAGCAATTTTCGACTCCTTGGATGCAACTTTTCCGGTGGAGTCAGCACCTAGGGCAAAGGTGGAGCAATATATATTTGCACCGGAGATTCGGAACATTGTGGCGTGTGAAGGGGAGGAGAGGATAGAGAGGCATGAGAGGTTGGAGAAATGGAGGAAGATAATGGAAGGGAAAGGGTTCAAAGGAGTTCCTTTAAGTCCTAATGCAGTGACTCAATCAAGGATATTGTTGGGTTTGTATTCATGTGATGGTTATAGGTTAACTGAGGATAAGGGTTGCTTGTTGCTTGGGTGGCAAGACAGAGCCATCATCGCAGCTTCTGCATGGCGATGCTGA 2022 0.3783 MINSLCGSSNSHKEKCLQPTSSNHTNIHSKKNTTNSSDDLDQINILTPQSLNLPSLKFDLDGDVEVQSPDSSMWESFFNDHLDINNDFMISSPIRNINPNSPQASTYNNNCSNYNNNNYGQGMQIQTFSPPRFGALNNNQQKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDYQGDVDFSSTKISSSSDQCFDMETPISTILDSLSMQNSSSSRYCGSISEESSILHGGNSSQDNDIYHQMGSMASASLSQALQQERYQEKHQKLQAQQQSLTVPIPIGIEQEQDSGLQLVHLLLACAEAVAKEEYMLAKRYLHQLNRVVTPLGDSMQRVASCFTESLSARLAATLTTKTSSNKKSTTPSSSSSSSSSCFSSFPSNPMEVLKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCIEAVRETGRCLTDLAHSLRIPFEFHGVGEQLEDLKPHMFHRHVGEALAVNTVNRLHRVPGNHLGNLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPVESAPRAKVEQYIFAPEIRNIVACEGEERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWRC 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00528 673 MobiDBLite consensus disorder prediction 355 375 - -
Tsu04g00528 673 MobiDBLite consensus disorder prediction 1 41 - -
Tsu04g00528 673 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 671 IPR005202 -
Tsu04g00528 673 ProSiteProfiles GRAS family profile. 287 672 IPR005202 -
Tsu04g00528 673 Pfam GRAS domain family 296 672 IPR005202 -
Tsu04g00528 673 PANTHER GRAS FAMILY PROTEIN RAM1 11 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00528 Tsu-Chr4 4905533 4908253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00528 290 672 GRAS Transcription Factor Family AT3G03450 42.857 3.15e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu04g00528 GRAS 1.3e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00528 - - gmx:100805039 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00528 04 4905533 4908253 Tsu06g00717 06 6252152 6255283 PCT