Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00506 ATGGTGGCCACAAAACAAGAAGGACCTGCTGTTGGAATTGATCTTGGCACAACATACTCTTGTGTTGCTGTGTGGCTTGATGATCAACAACGAGTTGAAATCATTCACAATGATCAAGGCAACAGAACTACACCTTCTTTTGTTGCTTTCACCGATGATCAAAGGTTGATTGGTGATGCCGCGAAAAACCAGACTGCTTCTAATCCAACCAACACTGTCTTTGaCGCTAAGAGGTTAATCGGTAGAAAGTTTAGTGATTCTGATGTTCAGAATGATATGATGTTGTGGCCATTCAAGGTTGTTGGGGTGAAAGAGGATAAACCTATGATTGTTATTAATTACAATGGTAAAGAGAAACACTTTTGTGCTGAGGAAATATCGTCTATGGTCCTCACAAAGATGCGAGAGGTTGCAGAGAAATTTTTAATGTCCCCCGTAAAGAATGCAGTTGTTACTGTGCCTGCTTATTTCAATGATTCTCAGCGAAAAGCCACTTTAGATGCTGGTACTATTGCTGGCCTTAATGTCATCCGGATAATCAATGAACCAACAACTGCTGCTCTTGCCTATGGCCTCGACAAGAGAACTAATTGGGTTGGAGAACGAAATGTTTTCATCTTCGACCTTGGTGGTGGAACTTTTGATGTGTCTCTCCTTAAGATTGAAGATGAGGTCTTTCATGTGAAGGCCACTGCTGGTAACACTCACCTTGGAGGAGAGGACTTTGATAATAGAATGGTGAACTATTTTGTAAATGAGTTTAATAAGAAGAACAAGGTGGACATTACTGGAAACTCAAGAGCCTTAAGGAGGTTGAGAACGGCATGTGAGAGAGCGAAAAGGActttatctttttcttctttcaccACCATTGATGTTGACTCTTTATTTCAAGGCATTGACTTCTTTACATCAATCACCCGTGCCAAGTTTGAGGAAATCAATATGGATCTTTTCAACGAGTGTTTGAAAATTGTTGAGAGTTGTCTTATTGATGCCAAGATGGACAAAAGTTCTATCCATGAAGTCGTCCTTGTTGGTGGCTCTTCTGGAATTCCAAAAGTACAACAACTATTGCAGGAGTTTTTCAAGGGGAAGGAATTATGCGAGAGCATCAACCCTGATGAGGTTGTTGCTTATGGTGCAGCTGTCCAGGCTGCTATGTTATGTGATGGTTTTAAGAACGTTCCAAACTTGGTTTTGAGAGATGTTACGCCATTGTCACTTGGTGTATCAGAACAAGGTGATATCatggatttttttattactaagaACACTAGCATTCCATTCAAGAAGACAAAGGAACATGTAACAAAAGTAGATTACCTAACTTCTATTGTTGTTAGTGTTTATGAGGGTGAGAGAGTAAGAGCAAGCAAAAACAATCTTCTTGGTTCTATTAAACTTTCTCTCCAACAAGCTCCTCGTGGTCACCGTCTAGGGATAAGCCTTGCTATCGATGAAAATGGTATCTTAACCGGTTCTGTTAAAGAAAAATCCACTGGTAGTAAGAAAAAGATTACAATTTctaatgaaaaagaaagattgtcatctgaagaaattaaaaaattgatcaGAGAAGCTGAAAATTACCGCGTTGAAGATGAGAAATTTCTAAGGAAGGCCAATGTGATGAATGCATTAGATTCATGCGTTTACAAGATCAATAATGCTCTAAAGAAGGAGGAGGTTAATGTAAATCTcttgtcaaaagaaaaagaccAGATTGTTTGTGCAATTACCAAGGCCACAAATTTGCTTGAGAATAACCAGCAGAGTGAAATAGATGTTTTTGAGAATCAACTGAAAGATCTTGAGAGTATATTTCAACGCATTACGGAAATTCCTAAGGAGtttatcaaaaagaaagaaactccTAAGGAAGGCCACAATTGGTTTTCGAAGTTCTTGTCACGGAGATCATGA 1926 0.3692 MVATKQEGPAVGIDLGTTYSCVAVWLDDQQRVEIIHNDQGNRTTPSFVAFTDDQRLIGDAAKNQTASNPTNTVFDAKRLIGRKFSDSDVQNDMMLWPFKVVGVKEDKPMIVINYNGKEKHFCAEEISSMVLTKMREVAEKFLMSPVKNAVVTVPAYFNDSQRKATLDAGTIAGLNVIRIINEPTTAALAYGLDKRTNWVGERNVFIFDLGGGTFDVSLLKIEDEVFHVKATAGNTHLGGEDFDNRMVNYFVNEFNKKNKVDITGNSRALRRLRTACERAKRTLSFSSFTTIDVDSLFQGIDFFTSITRAKFEEINMDLFNECLKIVESCLIDAKMDKSSIHEVVLVGGSSGIPKVQQLLQEFFKGKELCESINPDEVVAYGAAVQAAMLCDGFKNVPNLVLRDVTPLSLGVSEQGDIMDFFITKNTSIPFKKTKEHVTKVDYLTSIVVSVYEGERVRASKNNLLGSIKLSLQQAPRGHRLGISLAIDENGILTGSVKEKSTGSKKKITISNEKERLSSEEIKKLIREAENYRVEDEKFLRKANVMNALDSCVYKINNALKKEEVNVNLLSKEKDQIVCAITKATNLLENNQQSEIDVFENQLKDLESIFQRITEIPKEFIKKKETPKEGHNWFSKFLSRRS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00506 641 Gene3D - 11 387 - -
Tsu04g00506 641 PANTHER HEAT SHOCK PROTEIN 70KDA 5 614 IPR013126 GO:0005524|GO:0140662
Tsu04g00506 641 Pfam Hsp70 protein 10 614 IPR013126 GO:0005524|GO:0140662
Tsu04g00506 641 Coils Coil 588 608 - -
Tsu04g00506 641 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 548 IPR029047 -
Tsu04g00506 641 SUPERFAMILY Actin-like ATPase domain 9 194 IPR043129 -
Tsu04g00506 641 SUPERFAMILY Actin-like ATPase domain 201 389 IPR043129 -
Tsu04g00506 641 PANTHER HEAT SHOCK 70 KDA PROTEIN 5 614 - -
Tsu04g00506 641 ProSitePatterns Heat shock hsp70 proteins family signature 1. 13 20 IPR018181 -
Tsu04g00506 641 Gene3D - 546 615 IPR029048 -
Tsu04g00506 641 Coils Coil 639 641 - -
Tsu04g00506 641 Gene3D - 195 369 - -
Tsu04g00506 641 ProSitePatterns Heat shock hsp70 proteins family signature 2. 206 219 IPR018181 -
Tsu04g00506 641 PRINTS 70kDa heat shock protein signature 212 222 - -
Tsu04g00506 641 PRINTS 70kDa heat shock protein signature 372 392 - -
Tsu04g00506 641 PRINTS 70kDa heat shock protein signature 340 356 - -
Tsu04g00506 641 PRINTS 70kDa heat shock protein signature 398 417 - -
Tsu04g00506 641 PRINTS 70kDa heat shock protein signature 61 69 - -
Tsu04g00506 641 PRINTS 70kDa heat shock protein signature 149 169 - -
Tsu04g00506 641 PRINTS 70kDa heat shock protein signature 9 22 - -
Tsu04g00506 641 PRINTS 70kDa heat shock protein signature 477 493 - -
Tsu04g00506 641 PRINTS 70kDa heat shock protein signature 39 51 - -
Tsu04g00506 641 Gene3D - 74 129 - -
Tsu04g00506 641 Gene3D Actin; Chain A, domain 4 238 321 - -
Tsu04g00506 641 ProSitePatterns Heat shock hsp70 proteins family signature 3. 343 357 IPR018181 -
Tsu04g00506 641 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 545 IPR029047 -
Tsu04g00506 641 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 545 617 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00506 Tsu-Chr4 4744491 4746671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00506 2 612 Calmodulin-binding Proteins AT3G12580 64.495 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00506 K03283 - gmx:102667572 844.343