Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00504 ATGGTCCTCACAAAGATGCGAGAAGCTGCAGAGAAATTTTTAATGTCCCCTGTAAAGAATGCAGTTGTTACGGTGCCTGCTTACTTCAATGATTCTCAGCGAAAAGCCACCATAGATGCTGGTACTATTGCTGGCCTTAATGTCATCCGGATAATCAATGAACCAACAGCTGCTGCTCTGGCATATGGCCTTGACACGAGAACTAACTGTGTTGGAGAACGAAATATTTTCATCTTCGACCTTGGTGGTGGGACATTTGATGTGTCTCTCCTTACAATTGAGGATAATGTCTTTCATGTGAAGGCCACTGCTGGCAACACTCACCTCGGAGGAGAGGACTTTGATAATAGAATGGTGAACTACTTTGCACAAGAGTTTCAAAAGAAGAGCAAGGTGGACATTACTGGAAACCCAAGAGCCTTAAGGAGGCTGAGAACGGCATGCGAGAGAGCGAAAAGGACtctatctttttcttctttcactaCCATTGAGGTTGATTCTTTATTACAGGGTATTGACTTCTCTTCATCAATTACCAGTGCCAAGTTTGAGGAAATCAATATGGATCTTTTCAAGGAGTGTTTGAAAACGGTTGAGAGTTGTCTTATTGATGCCAAGATGGACAAAAGTTCTATCCATGATGTTGTCCTTGTTGGTGGATCTTCTAGAATTCCAAAAGTACAACAGCTGTTGCAAGAGTTTTTCAAGGGGAAGGAATTATGTGAGAACATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCTGCTATGTTATGCGATGGTTTTAAGAATGTTTCAAACTTTGTGCTGCGAGATGTGACACCCTTATCACTTGGTATTTCTCTAAATGATCGTACCATGAGTGCCGTGATTCCTAGGAACAGTTCCATCCCTGTCAAGAAAACAAAAGGATATGTTACAGCTGAAGATAACCATGGTGCCTCTATTCTGGTTTATGAGGGTGAGAGAGCAAGTGTTGCAAACAACAATCTGCTAGGTTCTTTTAGTCTTCATTGCCGTCCTGGTGCTCCTCGTGGCACGCCCTTTGAGGTATGCTTCACTATTAATGAAAATGGTATCTTAACTGTTTCAGCGATGGAAAATTCTACCGGTAATACGAACCAGATCACAATAACCAATGACAAAGAAAGGTTATCcgtagaagaaataaaaaaattgattgaaaaagcTAGAGAGTATCACGCTGAAGATGAGAGATTCCTAAGGAAGGTTAAGGTAATGAATGAATTAGATGACATCATTTACAAGTTGACGAATGGTCTAAAGAATGAGGATGTTAAATCAAAGCTATCATCTCAAAAAGTTAAAAAGATCAATCTTGCAATTACTAAGACTACCGATTTGCTTGATAAGAACAAGCACCAGAATGAACTACATGTTCTCGAATATCATTTGAAGGAGCTTGAAACTATGTTGGAAGACCTTAAAGTCAAGACTGGCTAG 1473 0.3958 MVLTKMREAAEKFLMSPVKNAVVTVPAYFNDSQRKATIDAGTIAGLNVIRIINEPTAAALAYGLDTRTNCVGERNIFIFDLGGGTFDVSLLTIEDNVFHVKATAGNTHLGGEDFDNRMVNYFAQEFQKKSKVDITGNPRALRRLRTACERAKRTLSFSSFTTIEVDSLLQGIDFSSSITSAKFEEINMDLFKECLKTVESCLIDAKMDKSSIHDVVLVGGSSRIPKVQQLLQEFFKGKELCENINPDEAVAYGAAVQAAMLCDGFKNVSNFVLRDVTPLSLGISLNDRTMSAVIPRNSSIPVKKTKGYVTAEDNHGASILVYEGERASVANNNLLGSFSLHCRPGAPRGTPFEVCFTINENGILTVSAMENSTGNTNQITITNDKERLSVEEIKKLIEKAREYHAEDERFLRKVKVMNELDDIIYKLTNGLKNEDVKSKLSSQKVKKINLAITKTTDLLDKNKHQNELHVLEYHLKELETMLEDLKVKTG 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00504 490 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 487 - -
Tsu04g00504 490 Gene3D - 418 488 IPR029048 -
Tsu04g00504 490 Pfam Hsp70 protein 1 484 IPR013126 GO:0005524|GO:0140662
Tsu04g00504 490 ProSitePatterns Heat shock hsp70 proteins family signature 2. 78 91 IPR018181 -
Tsu04g00504 490 Coils Coil 461 488 - -
Tsu04g00504 490 PANTHER HEAT SHOCK PROTEIN 70KDA 1 487 IPR013126 GO:0005524|GO:0140662
Tsu04g00504 490 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 267 421 IPR029047 -
Tsu04g00504 490 ProSitePatterns Heat shock hsp70 proteins family signature 3. 215 229 IPR018181 -
Tsu04g00504 490 Gene3D - 2 259 - -
Tsu04g00504 490 PRINTS 70kDa heat shock protein signature 21 41 - -
Tsu04g00504 490 PRINTS 70kDa heat shock protein signature 270 289 - -
Tsu04g00504 490 PRINTS 70kDa heat shock protein signature 212 228 - -
Tsu04g00504 490 PRINTS 70kDa heat shock protein signature 244 264 - -
Tsu04g00504 490 PRINTS 70kDa heat shock protein signature 349 365 - -
Tsu04g00504 490 PRINTS 70kDa heat shock protein signature 84 94 - -
Tsu04g00504 490 Gene3D Actin; Chain A, domain 4 110 193 - -
Tsu04g00504 490 SUPERFAMILY Actin-like ATPase domain 73 261 IPR043129 -
Tsu04g00504 490 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 266 417 IPR029047 -
Tsu04g00504 490 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 417 488 IPR029048 -
Tsu04g00504 490 SUPERFAMILY Actin-like ATPase domain 1 65 IPR043129 -
Tsu04g00504 490 Gene3D - 67 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00504 Tsu-Chr4 4739490 4740962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00504 1 481 Calmodulin-binding Proteins AT3G12580 63.843 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00504 K03283 - gmx:102667578 650.203