Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00494 atggccaAGAAATATGAAGGACCTGCTATTGGAATTGATCTTGGCACAACCTATTCATGTGTTGCTAATACCAAATATTCAGATTTTTGCTCAAATTTCACATATTTCATGCTTTTGAATTCTTTTGTTGCTTTTACTGACTCACAAAGATTGGTTGGTGATGCTGCCAAGAATCAAGCCGCTTCAAATCCAACAAACACTGTCTTTGATGCAAAGAGGTTGATTGGAAGGAAATTTAGCGATTCTGTTATTCAAAATGATATTCAGTTGTGGCCCTTTAAGGTTGTTGATGGCAATGACGACAACCCGGTTATAGTTGTTAAGTTTAAGAATGAGGAAAAGTGTTTAGCTCCAGAGGAAATTTCATCtatgattctcttgaaaatgaagGAGATAGCAGATAAATTTTTGGAGTCAAAGGTTAAAGATGCGGTGATTACTGTGCCTGCTTATTTCAATGATTCTCAGCGAAAAGCTACTAAAGATGCTGGTACCATTGCCGGACTCAATGTCCTACGGATAATCAATGAACCTACTGCTGCTGCTCTAGCATATGGTCTACAAAAGAGAGCAAATTGTGCTGAAAGTAGAAATATTTTCATCTTTGATCTTGGTGGTGGAACTTTCGATGTGTCTCTTTTGTCGATAAAGAATAATGAATTTGATGTTAAGGCTACTGCAGGAGACACTCACCTTGGAGGAGAGGACTTTGATCAGAGAATGGTAAATCATTTCGCTAAAGAGTTCAAGAGGAAGCATAAGAAGGATATTAGTGGGAACTTGAGGGCTATTAGGAGGTTAAGGACTGCGTGTGAGAGGGCAAAGAGGACTCTTTCATTTGACACAGAGGTTACAATTGATATTGATGCTTTATTTGAGGGTAATGATTTTTGTTCATCAATCACCCGTGCTAAGTTTGAGCAACTCAACAACGAACTCTTTGAAAAGTGTATGGAGACGGTTCAAAGTTGCCTTACCGATGCTAAATTGGATAAGAAACTTGTAGATGATGTTGTACTTGTTGGTGGTTCTTCTCGGATTCCAAAAGTGCAGCAGCTATTACAAGACTTTTTCAACGGAAAGGAGTTATGTGTGAGTATCAACCCGGATGAAGCTGTCGCGTATGGTGCGGCAGTGCAAGCTGCATTGTTAGGTAAAGGTATAAAGTCTTTTCCAAACCTAGTGTTGTGA 1191 0.382 MAKKYEGPAIGIDLGTTYSCVANTKYSDFCSNFTYFMLLNSFVAFTDSQRLVGDAAKNQAASNPTNTVFDAKRLIGRKFSDSVIQNDIQLWPFKVVDGNDDNPVIVVKFKNEEKCLAPEEISSMILLKMKEIADKFLESKVKDAVITVPAYFNDSQRKATKDAGTIAGLNVLRIINEPTAAALAYGLQKRANCAESRNIFIFDLGGGTFDVSLLSIKNNEFDVKATAGDTHLGGEDFDQRMVNHFAKEFKRKHKKDISGNLRAIRRLRTACERAKRTLSFDTEVTIDIDALFEGNDFCSSITRAKFEQLNNELFEKCMETVQSCLTDAKLDKKLVDDVVLVGGSSRIPKVQQLLQDFFNGKELCVSINPDEAVAYGAAVQAALLGKGIKSFPNLVL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00494 396 Pfam Hsp70 protein 9 385 IPR013126 GO:0005524|GO:0140662
Tsu04g00494 396 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu04g00494 396 PRINTS 70kDa heat shock protein signature 56 64 - -
Tsu04g00494 396 PRINTS 70kDa heat shock protein signature 367 387 - -
Tsu04g00494 396 PRINTS 70kDa heat shock protein signature 144 164 - -
Tsu04g00494 396 PRINTS 70kDa heat shock protein signature 207 217 - -
Tsu04g00494 396 PRINTS 70kDa heat shock protein signature 335 351 - -
Tsu04g00494 396 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 396 - -
Tsu04g00494 396 PANTHER HEAT SHOCK PROTEIN 70KDA 4 396 IPR013126 GO:0005524|GO:0140662
Tsu04g00494 396 Gene3D - 190 364 - -
Tsu04g00494 396 SUPERFAMILY Actin-like ATPase domain 9 189 IPR043129 -
Tsu04g00494 396 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu04g00494 396 ProSitePatterns Heat shock hsp70 proteins family signature 3. 338 352 IPR018181 -
Tsu04g00494 396 ProSitePatterns Heat shock hsp70 proteins family signature 2. 201 214 IPR018181 -
Tsu04g00494 396 Gene3D - 69 124 - -
Tsu04g00494 396 SUPERFAMILY Actin-like ATPase domain 196 384 IPR043129 -
Tsu04g00494 396 Gene3D - 10 382 - -
Tsu04g00494 396 Gene3D Actin; Chain A, domain 4 233 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00494 Tsu-Chr4 4683526 4690882 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00494 1 396 Calmodulin-binding Proteins AT1G56410 68.922 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00494 K03283 - gmx:102667578 539.265