Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00488 ATGGCAAAAAAATATGAGGGAGTTGCTATAGGAATTGACCTTGGCACCACTTATTCATGTGTTGGAGTGTGGCAGGAACAGAACGATCGTGTGGAAATCATTCACAATGATCAAGGAAACAAAACAACACCTTCTTGTGTTGCTTTCACTAGTTCTCAAAGATTGATTGGTGATGCTGCCAAAAATCAAGCTTCCTCCAACCCAACCAACACTATCTTTGATTCAAAGAGGCTGATTGGAAGGAAATTTAGTGATCCTGTTATTCAAAAGGATATGCTGTTGTGGCCCTTCAAGGTAAATTCTGATGCTAATGATAAACCAAAGGTTGTTGTGACATGCAAGGGTGAAGAAAAACACTTTTTTGCGGAAGAAATATCATCTATGGTCCTCACAAAGATGCGGGAGTTTGCTGAAGTATTTTTGGAGTCACCTGTAAAAAATGCAGTGATTACAGTACCTGCTTATTTTAATGATTCACAACGCAGAGCCACCAAAGATGCTGGTGTTATTGCTGACCTCAACGTAATAAGGATAATCAATGAACCTACTGCTGCTGCACTTGCATATGGCCTTCAAAAGAGAGCTAATTGTgttaaagagagaaaaattttCATCTTCGATCTTGGTGGTGGAACTTTTGATGTGTCTCTCCTTACAATTAAGAATAATGCCTTTAAAGTGATTGCCACTGCTGGAGACACTCACCTCGGAGGAGAGGACTTTGATAATCGAATGGTGAATCATTTTGTGAATGAGTTgaagaggaaaaacaaagtTGACATTAGTGGAAATTCAAAAGCACTGAGGAAGTTAAAAACTGCTTGTGAGAGGGCAAAAAGGACACTGTCTTACGACACTGAGGTCACAATTGACATAGATGCTATATGTCAGAGTGTCGACTTCTGTTCATCAATCACTCGAGCCAAGTTTGAGCAACTCAACATGGACCTCTTTGAAAAGTGTATGGAGACTGTTAAGAGTTGTTTTAGTGATGCTAAGTTAGACAAAAGTAGTATTGATGATATTGTACTTGTTGGTGGCTCTTCTAGGATTCCTAAAGTGCAGAATCTGTTGCAAAACTTTTTCAGGGGGAAGGATATTTTTAAAAGCATTAATCCAGACGAGGCTGTTGCTTATGGTGCTGCTGTCCAGGCTGCTTTGCTGAGTGGAGGCATTAAGACTGTTCCGAACATGACGCTGCAAGATGTTATACCTTTGTCTCTTGGTACGTCAGTAAGAGGAGATATCATGAGTATAGTTATTCCAAGGAACACTTCTATTCCTGTCAAGAAGACAAAAAGATATTATACAGTAGATGATTACCAACGCAGTGTGTTGAATGAGGTTTATGAGGGTGAAAGAATAATTGCCAGCGAGAACAACTTGTTGGGTTTTTTTGATCTCCCAGTTGCTCGTGGACCCCGTGGCCTTCCTCACGAAGTATGCTTTACAATAGATTCTGATGGTATTTTGAATGTCTCTTGTCATGATGAAACTTCTGGCAATAAGAAAGATATTACGATAACTAATGAAAATGGAAGATTATCAACCGTTGAAATTCAGAGAATGATTCAAGAAGCTGAAAATTTCAAGGCTGAAGACATGAAGTTCAAGGAGAAAGTTAATGCAATAAATGCGTTGGACGACTTTGTTTACAATGTGAAGAAAGTTATGAAGGATAAGAGTGTTAGTGATTTGCTTCCTACACAAAGGAAAAATAAGATCACTTCCCTAATAACAAAATGTGAAAATTTGCTTGATGGTGACAAGAAGGAAGAAACCTACATGTTTGTTAACATGTTGAAGGAGCTTGAGAGCATCTCTGAATCTGCTTATGGTCCCAATAAAAATTGtgaTGCAAAGATACATAAAAGTAGTATCGATGATGTTGTACTTGTTGGTGGCTCTTCTAGGATTCCTAAAGTGCAGAATCTGTTGCAAAACTTTTTCAGTGGGAAGGATATTTTTAAAAGCATCAATCCTGACGAGGTTGTTGCTTATGGTGCTGCTGTCCAGGCTGCTTTGTTGAGTGGAGGCTTTAAGACTGTTCCGAACATGACGCTGCAAAATGTTATACCTTTGTCTCTTGGTACtgaTGCAAAGATACATAAAAGTAGTATCGATGATGTTGTACTTGTTGGTGGCTCTTCTAGGATTCCTAAAGTGCAGAATCTGTTGCAAAACTTTTTCAGTGGGAAGGATATTTTTAAAAGCATCAATCCTGACGAGGTTGTTGCTTATGGTGCTGCTGTCCAGGCTGCTTTGTTGAGTGGAGGCTTTAAGACTGTTCCGAACATGACGCTGCAAAATGTTATACCTTTGTCTCTTGGTACGTCAGTAAGAGGAGATATCATGGATATCGTGATCCTAAGGAACACTTCTATTCCCatcaagaagagaaaaagatatGTTACAATAGATGATTACCGACGCAGTGTGTTGAATGAGGTTTACGAGGGTGAGAGAATAATTGCCAGCGAGAACAACTTGTTGGGTTTTTTTTATCTCCCAGTTGCTCGTGGACCCCGGGGCCTTCCTCACGAAGTATGCTTTAGAATAGATTCTGATGGTATTTTGAATGTCTCTTGTGAGGATGAAACCTCTGGGAATAAGAACGATATTACGATAACTAATGAAACTGGAAGATTGTCAAGTACTGAAATTAAGAGAATGATTCAAGAAGCTGAGAATTTCAGAGCTGAAGACATGAAGTTCAAGAAGAAAGTTGAGGCAATTAATGCTTTGGATGACTTTCTTTACATTGTGAAGAAAGTTATGATGGATCAGGGTGCTAGTTCTTTGTTTCCCGCACAAAGCAAAAATAAGATCACTTCTCTAATCACAGAATGTGAATATTTGCTTGATGGTGACAATAAGGAAGAAACCTACGTGTTCGTGGACATTTTGAAGGATCTTCAGAGCATCTTTGGATCTGCTTTGGGAACAATAAAAAATGGTTAG 2961 0.384 MAKKYEGVAIGIDLGTTYSCVGVWQEQNDRVEIIHNDQGNKTTPSCVAFTSSQRLIGDAAKNQASSNPTNTIFDSKRLIGRKFSDPVIQKDMLLWPFKVNSDANDKPKVVVTCKGEEKHFFAEEISSMVLTKMREFAEVFLESPVKNAVITVPAYFNDSQRRATKDAGVIADLNVIRIINEPTAAALAYGLQKRANCVKERKIFIFDLGGGTFDVSLLTIKNNAFKVIATAGDTHLGGEDFDNRMVNHFVNELKRKNKVDISGNSKALRKLKTACERAKRTLSYDTEVTIDIDAICQSVDFCSSITRAKFEQLNMDLFEKCMETVKSCFSDAKLDKSSIDDIVLVGGSSRIPKVQNLLQNFFRGKDIFKSINPDEAVAYGAAVQAALLSGGIKTVPNMTLQDVIPLSLGTSVRGDIMSIVIPRNTSIPVKKTKRYYTVDDYQRSVLNEVYEGERIIASENNLLGFFDLPVARGPRGLPHEVCFTIDSDGILNVSCHDETSGNKKDITITNENGRLSTVEIQRMIQEAENFKAEDMKFKEKVNAINALDDFVYNVKKVMKDKSVSDLLPTQRKNKITSLITKCENLLDGDKKEETYMFVNMLKELESISESAYGPNKNCDAKIHKSSIDDVVLVGGSSRIPKVQNLLQNFFSGKDIFKSINPDEVVAYGAAVQAALLSGGFKTVPNMTLQNVIPLSLGTDAKIHKSSIDDVVLVGGSSRIPKVQNLLQNFFSGKDIFKSINPDEVVAYGAAVQAALLSGGFKTVPNMTLQNVIPLSLGTSVRGDIMDIVILRNTSIPIKKRKRYVTIDDYRRSVLNEVYEGERIIASENNLLGFFYLPVARGPRGLPHEVCFRIDSDGILNVSCEDETSGNKNDITITNETGRLSSTEIKRMIQEAENFRAEDMKFKKKVEAINALDDFLYIVKKVMMDQGASSLFPAQSKNKITSLITECEYLLDGDNKEETYVFVDILKDLQSIFGSALGTIKNG 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00488 986 Gene3D - 10 384 - -
Tsu04g00488 986 Gene3D - 884 982 IPR029048 -
Tsu04g00488 986 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 513 IPR029047 -
Tsu04g00488 986 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 752 881 IPR029047 -
Tsu04g00488 986 Gene3D - 685 741 - -
Tsu04g00488 986 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu04g00488 986 PRINTS 70kDa heat shock protein signature 38 50 - -
Tsu04g00488 986 PRINTS 70kDa heat shock protein signature 60 68 - -
Tsu04g00488 986 PRINTS 70kDa heat shock protein signature 148 168 - -
Tsu04g00488 986 PRINTS 70kDa heat shock protein signature 211 221 - -
Tsu04g00488 986 PRINTS 70kDa heat shock protein signature 339 355 - -
Tsu04g00488 986 PRINTS 70kDa heat shock protein signature 371 391 - -
Tsu04g00488 986 PRINTS 70kDa heat shock protein signature 397 416 - -
Tsu04g00488 986 PRINTS 70kDa heat shock protein signature 476 492 - -
Tsu04g00488 986 Gene3D - 73 128 - -
Tsu04g00488 986 SUPERFAMILY Actin-like ATPase domain 698 758 IPR043129 -
Tsu04g00488 986 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Tsu04g00488 986 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Tsu04g00488 986 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu04g00488 986 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 548 IPR029047 -
Tsu04g00488 986 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Tsu04g00488 986 Gene3D Actin; Chain A, domain 4 237 320 - -
Tsu04g00488 986 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 608 IPR029048 -
Tsu04g00488 986 PANTHER HEAT SHOCK PROTEIN 70KDA 619 698 IPR013126 GO:0005524|GO:0140662
Tsu04g00488 986 PANTHER HEAT SHOCK PROTEIN 70KDA 698 981 IPR013126 GO:0005524|GO:0140662
Tsu04g00488 986 PANTHER HEAT SHOCK PROTEIN 70KDA 4 612 IPR013126 GO:0005524|GO:0140662
Tsu04g00488 986 SUPERFAMILY Actin-like ATPase domain 618 678 IPR043129 -
Tsu04g00488 986 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 763 916 IPR029047 -
Tsu04g00488 986 Pfam Hsp70 protein 619 697 IPR013126 GO:0005524|GO:0140662
Tsu04g00488 986 Pfam Hsp70 protein 699 966 IPR013126 GO:0005524|GO:0140662
Tsu04g00488 986 Pfam Hsp70 protein 9 604 IPR013126 GO:0005524|GO:0140662
Tsu04g00488 986 Gene3D - 614 656 - -
Tsu04g00488 986 Gene3D - 515 613 IPR029048 -
Tsu04g00488 986 PANTHER HEAT SHOCK 70 KDA PROTEIN 619 698 - -
Tsu04g00488 986 PANTHER HEAT SHOCK 70 KDA PROTEIN 698 981 - -
Tsu04g00488 986 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 612 - -
Tsu04g00488 986 Gene3D - 194 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00488 Tsu-Chr4 4638462 4644779 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00488 699 986 Calmodulin-binding Proteins AT3G12580 51.203 1.14e-81 276