Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00485 ATGGCCAAAAAATATGAGGGACCTGCTATTGGAATAGACCTTGGCACAACCTATTCATGTGTTGCTGTATGGCAGGATCAAACCAATAGAGCAGAGATCATACACAATGATCAAGGAAACAGAACAACACCTTCTTTTGTTGCTTTCACAAGTGATCAAAGGTTGATTGGTGATGCTGCTAAAAATCAAACAGCTTCAAATCCAGCCAACACTATCTATgATGCAAAGAGGTTACCTGTTAAAAACGCAGTGATTACTGTTCGGGCGTATTTCAATGATTCTCAGCGAAAAGCCACAAAAGATGCTGGCTCTATTGCTGGCCTGAATGTAATGTGGATAATCAATGAACCAACTGCTGCTGCTCTTGCATACGGCCTTCAAAAAAGAACTAACTGTGTTGAAAAGAGAAACATCTTCATCTTTGATCTTGGTGGTGGAACTTTTGATGTATCTCTCCTTACAATTAAGGATAATGTCTTTCAAGTTAAGGCCACTGCCGGAGACACTCACCTTGGAGGAGAGGACTTTGATAACCAAATGGTGAATCACTTTGTGGAGGAGTTCAAGAGGAAGAACAATGTCTACATAAGTGGGAACCCAGGATCCTTGAGGAGGTTGCGGACTAGCTGTGAGAGGGCGAAGAGGACACTTTCTTTTGCTGTTGTCACTACTGTTGAGGTAATTGCTTTGTTTCAGGGCATTGACTTATCTTCATCTATCACTCGAGCAAAGTTCGAGGAAATTAACATGGACCTCTTTGAAAAGTGTATGGAGATTGTCAAGAGATGCTTTGTGGATTCTGGCATGCACAAGAGTAGTATAGATGATGTTGTCCTTATTGGCGGCTCATCTAGAATCCCCAAATTGCAGCAGCTATTGCAGGACTTTTTTATGGGGAAGGATTTGTGTATGAGCAATAACCCTGATGAAGCTGTGGCTTATGGTGCAGCAGTCCAGGCTGCTTTGTTGAGCAATGATATTAAAAATGGCCCAAACTTGGTGTTGTGA 1008 0.4196 MAKKYEGPAIGIDLGTTYSCVAVWQDQTNRAEIIHNDQGNRTTPSFVAFTSDQRLIGDAAKNQTASNPANTIYDAKRLPVKNAVITVRAYFNDSQRKATKDAGSIAGLNVMWIINEPTAAALAYGLQKRTNCVEKRNIFIFDLGGGTFDVSLLTIKDNVFQVKATAGDTHLGGEDFDNQMVNHFVEEFKRKNNVYISGNPGSLRRLRTSCERAKRTLSFAVVTTVEVIALFQGIDLSSSITRAKFEEINMDLFEKCMEIVKRCFVDSGMHKSSIDDVVLIGGSSRIPKLQQLLQDFFMGKDLCMSNNPDEAVAYGAAVQAALLSNDIKNGPNLVL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00485 335 PRINTS 70kDa heat shock protein signature 306 326 - -
Tsu04g00485 335 PRINTS 70kDa heat shock protein signature 38 50 - -
Tsu04g00485 335 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu04g00485 335 PRINTS 70kDa heat shock protein signature 274 290 - -
Tsu04g00485 335 Gene3D - 129 303 - -
Tsu04g00485 335 Gene3D - 79 321 - -
Tsu04g00485 335 Gene3D - 2 78 - -
Tsu04g00485 335 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 78 - -
Tsu04g00485 335 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu04g00485 335 ProSitePatterns Heat shock hsp70 proteins family signature 2. 140 153 IPR018181 -
Tsu04g00485 335 Pfam Hsp70 protein 9 78 IPR013126 GO:0005524|GO:0140662
Tsu04g00485 335 Pfam Hsp70 protein 79 327 IPR013126 GO:0005524|GO:0140662
Tsu04g00485 335 Gene3D Actin; Chain A, domain 4 172 255 - -
Tsu04g00485 335 PANTHER HEAT SHOCK PROTEIN 70KDA 4 78 IPR013126 GO:0005524|GO:0140662
Tsu04g00485 335 ProSitePatterns Heat shock hsp70 proteins family signature 3. 277 291 IPR018181 -
Tsu04g00485 335 PANTHER HEAT SHOCK 70 KDA PROTEIN 79 335 - -
Tsu04g00485 335 SUPERFAMILY Actin-like ATPase domain 8 128 IPR043129 -
Tsu04g00485 335 PANTHER HEAT SHOCK PROTEIN 70KDA 79 335 IPR013126 GO:0005524|GO:0140662
Tsu04g00485 335 SUPERFAMILY Actin-like ATPase domain 135 324 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00485 Tsu-Chr4 4621969 4623053 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00485 1 78 Calmodulin-binding Proteins AT3G12580 76.923 6.63e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00485 K03283 - gmx:100804476 447.973