Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00477 ATGATATACAGTTATGGCCGTTTAAGGTTGTTGCTGGTATTGATGACAACCCTCAGATCATTGTTCAATATAAGGGTGAGGAAAAACGCCTTTCTGCTGAAGAAATCTCTTCTNATTGTCCTCACAAAGATGCGAGAAATTGCAGAGAAGTTTTTGATGTCATCTGTCAAGGATGCAGTTATTACCGTGCCTGCTTATTTCAACGATTCTCAACGAAAAGCTACAAAAGATGCCGGTGCTATTGCTGGACTTAATGTAATTCGGATAATCAATGAGCCTACTGCTGCTGCCCTTGCGTATGGCCTTCAGAAGAGAGCAAATAATGTTGGAAAACGAAATGTGTTCATCTTTGATCTTGGTGGTGGCACTTTTGATGTGTCTCTTCTTACATTTAAGGACAATAACTATGAAGTAAAGGCCACATCAGGAGATACACATCTTGGGGGAGAGGACTTTGATAATAGAATGGTGAACCATTTAGTGAAGGAGTTTAAGAGGAAGAATAATGTGGACATCAATGGGAGCGCGAAGTCCCTTAGGAGGTTGAGAACTGCTTCTGAGAAGGCTAAAAGGACATTGTCATTTGATACTGTGGCTATGATTGACATAGACGCTCTATACGAGGGAATTGACTTCACTTTGTCTGTCAGTCGGGCCAAGTTTGAGCAACTGAACATGGATctgtttgaaaaatgtttggAGACTGTTAAGAGTTGTTTTAGTGATGCTAAGATGGACAAAAGCAGTATAGATGATGTTGTACTTGTTGGTGGATCTTCTAGGATTCCCAAAGTGCAGCAGCTATTGAAGGAATTTTTTGAAGGGAAGGAACTGTACAGTAGCATCAATCCGGATGAGGCTGTTGCTTATGGTGCAGCTATTCAGGCTGCTTTGCTCAGTGAAGACGTTAAGAATGTTCCGAATTTGGTGCTGCAAGATGTTACCCCTTTGTCACTTGGTATGGACGTAATAGGAGATGTCATGGATGTGGTGATTCCAAAAAACACCCCCATTCCTGTTAAGAAGACAAAACAGTATGCGACAGTTAAAGATAACCAATCTGTTGTCTCAATTATGGTTTATGAGGGTGAAAGAAAGACTGCGAGTGAGAACAACCTGCTTGATTTCTTTACTCTGTCTGTTCCTCGTGCACCTCGTGGACTTTCTGTCCAAGTATGCTTTACAATAGATGATGATGGTATATTAAACGTCTCTGCTGTGGAAGAAAGCAGTGGTAACAAGAAAGATATTACAATAACTAGTAAAAATGGAAGACTGTTGTTACTTGTGAAAGAATTATTCGATCATTGGGTAAAAATCAGCAAGAAGAAACGAGCCCAATAG 1344 0.4003 MIYSYGRLRLLLVLMTTLRSLFNIRVRKNAFLLKKSLXIVLTKMREIAEKFLMSSVKDAVITVPAYFNDSQRKATKDAGAIAGLNVIRIINEPTAAALAYGLQKRANNVGKRNVFIFDLGGGTFDVSLLTFKDNNYEVKATSGDTHLGGEDFDNRMVNHLVKEFKRKNNVDINGSAKSLRRLRTASEKAKRTLSFDTVAMIDIDALYEGIDFTLSVSRAKFEQLNMDLFEKCLETVKSCFSDAKMDKSSIDDVVLVGGSSRIPKVQQLLKEFFEGKELYSSINPDEAVAYGAAIQAALLSEDVKNVPNLVLQDVTPLSLGMDVIGDVMDVVIPKNTPIPVKKTKQYATVKDNQSVVSIMVYEGERKTASENNLLDFFTLSVPRAPRGLSVQVCFTIDDDGILNVSAVEESSGNKKDITITSKNGRLLLLVKELFDHWVKISKKKRAQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00477 447 Gene3D Actin; Chain A, domain 4 148 231 - -
Tsu04g00477 447 PANTHER HEAT SHOCK 70 KDA PROTEIN 38 426 - -
Tsu04g00477 447 Gene3D - 40 296 - -
Tsu04g00477 447 PANTHER HEAT SHOCK PROTEIN 70KDA 38 426 IPR013126 GO:0005524|GO:0140662
Tsu04g00477 447 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 309 423 IPR029047 -
Tsu04g00477 447 Gene3D - 27 39 - -
Tsu04g00477 447 ProSitePatterns Heat shock hsp70 proteins family signature 2. 116 129 IPR018181 -
Tsu04g00477 447 PRINTS 70kDa heat shock protein signature 387 403 - -
Tsu04g00477 447 PRINTS 70kDa heat shock protein signature 308 327 - -
Tsu04g00477 447 PRINTS 70kDa heat shock protein signature 122 132 - -
Tsu04g00477 447 PRINTS 70kDa heat shock protein signature 59 79 - -
Tsu04g00477 447 PRINTS 70kDa heat shock protein signature 282 302 - -
Tsu04g00477 447 PRINTS 70kDa heat shock protein signature 250 266 - -
Tsu04g00477 447 Gene3D - 105 279 - -
Tsu04g00477 447 SUPERFAMILY Actin-like ATPase domain 29 104 IPR043129 -
Tsu04g00477 447 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 297 446 IPR029047 -
Tsu04g00477 447 Pfam Hsp70 protein 30 424 IPR013126 GO:0005524|GO:0140662
Tsu04g00477 447 ProSitePatterns Heat shock hsp70 proteins family signature 3. 253 267 IPR018181 -
Tsu04g00477 447 SUPERFAMILY Actin-like ATPase domain 111 299 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00477 Tsu-Chr4 4463342 4466763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00477 21 447 Calmodulin-binding Proteins AT3G12580 62.326 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00477 K03283 - gmx:102667578 527.324