Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00476 atggcaGGACAAGGAAAGAAAGTGGCAATAGGAATCGACCTAGGAACAACCTATTCTTGTGTTGCTGTGTGGAGGCATGATAATATTGAGATCATAGTGAATGATCAAGGGAACAGAATAACACCTTCTTATGTTGCATTCGCAGACTCTCAAAGGATGATTGGTGATTCTGCTTTCAACGTCGCTGCTTCCAACCCAACCAACACTATATTCGACGCAAAGAGGCTAATTGGTAGGAAGTTTAGCGACCCCATAGCTCAGAGTGATATGAAGTTATGGCCATTCAAAGTAAACAGTGGCCTCGATGACAAACCCATGATTGTCGTCAATTACAATGATGAGGAAAAGCATTTTTTTGCTGAGGAAATTTCATCCATGGTATTGACAAAAATGCGTGAGATTGCAGAAGCTTACCTTAGATCAACAGTGAATGATGTTGTTATAACTGTGCCTGCTTACTTCAATAACTCACAAAGACAAGCTACTAGAGATGCAGGTGTTATTGCAGGCCTTAACGTTATGCGAATACTCAATGAGCCTACTGCAGCAGCAATTGCATATGGACTTGGGAAGAAACCATTTAATCATGGACCTAGACATGTCTTCATTTTTGATTTAGGTGGTGGTACATTGGATGTATCCGTTCTCacatttgagaaagaaaatatCGATATTAAGGCCATTGGCGGAGACACCCACCTCGGGGGACAAGACTTTGATTATACAATGGTGAACTATTTCATGAAGGAGTTCCTGAGGAAGCATAAGATTGATATTAGTGGAGACCCAAGAGCCCTTAGGAGGTTGAAAACTGCTTGTGAAAAAGCAAAGAGAATACTTTCTTCCAATACTGAAACCACCATTGAGATAGAATGTTTAAAAGATGGTATAGATCTCTGCTTACCAATTAGTCGTGCAAGGTTTGAGGAACTCAACAAGAATCACTTCAAAAAGTGCATGGAGATTGTAGAAAAGTGTCTAATAGATAGCAAGATGGACAAGAGCAGAATTCATGATGTTGTCCTTGTTGGTGGATCTACAAGGATCGTAAAAATGCAACAACTACTGAGTGATTTCTTTGAAGGGAAGGAATTATGCAATAGCATCAATCCCGATGAGGTGGTTGCATATGGTGCCGCTGTCCATGCTTCTATGTTGAGTGGGGAAATTAGCGAAAAGGTTCAAGATTTGAAATTGAGGGAGGTCATTCCTTTGTCCCTTGGATTGGAAGTAATTGGAGGAATCATGGAAATAATGATTCCTAGGAATACCATATTTCCTATAGACATGGAAGAAGTATTCACCACAACATTCGACAACCAAATCAATATTACCGTTAATGTTTATGAGGGTGAGAGACAAATGATCAGGGACAACAACTTGCTTGGAACATTTGAGTTCAAAATTCCTCCAGTTCCGAAAGGTGTTCCTCAAATCAAGATCAACTTTCAAATTAATGATGATGGCATCTTACACGTCTCTGCCACGGAAGAAATTCTTGGAGTTAATAAGAAGGTTAAGATAATAAGTCAAAGTGGAAGGCTATCAGATGAGGAAATTGAGAGAATGATCAAAGAAGCTGGGAAGTACAAGGAAGAGGACAAAAGGTATAAGAAGAATGTAGAAGCaagaaatgaattgcaaacgtatGCATACAACATGCGAAATGCCATAAATGATAAGGAGATTAGTTTGAAGCTTTCAGCAGAAGATAAGAAAGAGATAGATGAAAAAGTCGATTTGGTTTTAGTGTGGCTTGATGTCAATGTGGTTGCAGAACAACATGATTGTGAAAAATTTCAAAGACTTCTTTCAAATGTGTTCGATCCAATTATTATGAAGATGATAAAAGACGACGAGGGGAGTAATGTGCAACAATGTACTGatgttcaaaataaaaagaacgAGGGGAGTAGTGTGCAGCAAGCGGAAACGAAAATGAATTTAATAGCCGAAATACCTCCGGCCATTGCTCTTGCTTTAAAGCTTGTTCTTGTAGGATTGCTCTTGCTTGCTTGTGGATGTTGA 2028 0.3826 MAGQGKKVAIGIDLGTTYSCVAVWRHDNIEIIVNDQGNRITPSYVAFADSQRMIGDSAFNVAASNPTNTIFDAKRLIGRKFSDPIAQSDMKLWPFKVNSGLDDKPMIVVNYNDEEKHFFAEEISSMVLTKMREIAEAYLRSTVNDVVITVPAYFNNSQRQATRDAGVIAGLNVMRILNEPTAAAIAYGLGKKPFNHGPRHVFIFDLGGGTLDVSVLTFEKENIDIKAIGGDTHLGGQDFDYTMVNYFMKEFLRKHKIDISGDPRALRRLKTACEKAKRILSSNTETTIEIECLKDGIDLCLPISRARFEELNKNHFKKCMEIVEKCLIDSKMDKSRIHDVVLVGGSTRIVKMQQLLSDFFEGKELCNSINPDEVVAYGAAVHASMLSGEISEKVQDLKLREVIPLSLGLEVIGGIMEIMIPRNTIFPIDMEEVFTTTFDNQINITVNVYEGERQMIRDNNLLGTFEFKIPPVPKGVPQIKINFQINDDGILHVSATEEILGVNKKVKIISQSGRLSDEEIERMIKEAGKYKEEDKRYKKNVEARNELQTYAYNMRNAINDKEISLKLSAEDKKEIDEKVDLVLVWLDVNVVAEQHDCEKFQRLLSNVFDPIIMKMIKDDEGSNVQQCTDVQNKKNEGSSVQQAETKMNLIAEIPPAIALALKLVLVGLLLLACGC 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00476 675 Gene3D - 10 383 - -
Tsu04g00476 675 Gene3D Actin; Chain A, domain 4 235 318 - -
Tsu04g00476 675 Pfam Hsp70 protein 9 614 IPR013126 GO:0005524|GO:0140662
Tsu04g00476 675 Gene3D - 192 366 - -
Tsu04g00476 675 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 3 623 - -
Tsu04g00476 675 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Tsu04g00476 675 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Tsu04g00476 675 SUPERFAMILY Actin-like ATPase domain 7 191 IPR043129 -
Tsu04g00476 675 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 547 IPR029047 -
Tsu04g00476 675 Gene3D - 71 126 - -
Tsu04g00476 675 PRINTS 70kDa heat shock protein signature 8 21 - -
Tsu04g00476 675 PRINTS 70kDa heat shock protein signature 369 389 - -
Tsu04g00476 675 PRINTS 70kDa heat shock protein signature 209 219 - -
Tsu04g00476 675 PRINTS 70kDa heat shock protein signature 396 415 - -
Tsu04g00476 675 PRINTS 70kDa heat shock protein signature 36 48 - -
Tsu04g00476 675 PRINTS 70kDa heat shock protein signature 146 166 - -
Tsu04g00476 675 PRINTS 70kDa heat shock protein signature 337 353 - -
Tsu04g00476 675 PRINTS 70kDa heat shock protein signature 58 66 - -
Tsu04g00476 675 PRINTS 70kDa heat shock protein signature 476 492 - -
Tsu04g00476 675 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Tsu04g00476 675 SUPERFAMILY Actin-like ATPase domain 198 386 IPR043129 -
Tsu04g00476 675 Gene3D - 545 617 IPR029048 -
Tsu04g00476 675 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 542 620 IPR029048 -
Tsu04g00476 675 PANTHER HEAT SHOCK PROTEIN 70KDA 3 623 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00476 Tsu-Chr4 4445735 4449972 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00476 1 617 Calmodulin-binding Proteins AT3G12580 63.592 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00476 K03283 - gmx:100798636 820.076