Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00475 ATGCGTGAAATTGCAGAGAAGTTTTTGGAGTCATCTGTTAAGGATGCAGTTATTACAGTGCCTGCTTATTTCAATGATTCTCAACGAAAAGCTACAAAAGATGCCGGTGCTATTGCTGGACTTAATGTAATTCGGATAATCAATGAGCCTACTGCTGCTGCACTTGCGTATGGCCTTCAGAAGAGATCAAATAATGTTGGAAAACGAAATGTGTTCATCTTTGATCTTGGTGGTGGAACTTTTGATGTGTCTCTTCTTACATTTAAGGACAATAACTATGAAGTAAAGGCCACATCAGGAGATACACATCTTGGGGGAGAGGACTTTGATAATAAAATGGTGAACCATTTAGTGAAGGAGTTTAAGAGGAAGAATAAAGTGGACATCAATGGGAACGCGAAGGCCCTTAGGAGGTTGAGAACTGCTTCTGAGAAGGCTAAAAGGACATTGTCATTTGATACTGAGGCTACGATTGACATAGACGCTCTATACCAGGGAATTGACTTCACTTTGTCAGTCACTCGTGCTAAGTTTGAGCAACTGAACATGGATctgtttgaaaaatgtttggAGATTGTTGAGAGTTGTTTTAGTGATGCTAAGATGGACAAAAGTAATATAGATGATGTTGTACTTGTTGGTGGATCGTCTAGGATTCCCAAAGTGCAGCAGCTATTGAAGGAATTTTTTGAAGGGAAGGAACTGTACAGTAGCATCAATCCGGATGAGGCTGTTGCTTATGGAGCAGCTATTCAGGCTGCTTTGCTCAGTGAAGACGTTAAGAATGTTCCGAATTTGGTGCTGCAAGATGTTACCCCTTTGTCACTTGGTGTGGAGATAAAAGGAGATGTCATGGATGTGGTGATTCCTAGAAACACCCCCATTCCTTTTAAGAAGACAAAAAACTATAAAACAACTGGTGATGAACTATCTGCTGTCGCAATTAAGGTTTATGAGGGTGAGAGAATGATTGCGAGTGAGAACAACCTGCTTGGTTTGTTTAATCTGCCTGTTCGTCGTGCACCTCGTGGACTTCCTTTCCAGGTATGCTATACTATAGATGCTGATGGTATATTGAACGTCTCTGCAGAGGAAGAAAGCAGTGGTAACAAGAAAGATATTACAATAACGAATGAAAATGGAAGACTGTCCGTGGATGAAATTGAGAGAATGATTAAAGAAGCTGAGTTCTTCAAGTCTGAAGACATGAAGCATATGGAGAAGttATTTCATGGAATTGGATCCTCAGCAGCACCCTCTGCTGTAGTGCCTGTTGCTGCATCATAG 1287 0.4048 MREIAEKFLESSVKDAVITVPAYFNDSQRKATKDAGAIAGLNVIRIINEPTAAALAYGLQKRSNNVGKRNVFIFDLGGGTFDVSLLTFKDNNYEVKATSGDTHLGGEDFDNKMVNHLVKEFKRKNKVDINGNAKALRRLRTASEKAKRTLSFDTEATIDIDALYQGIDFTLSVTRAKFEQLNMDLFEKCLEIVESCFSDAKMDKSNIDDVVLVGGSSRIPKVQQLLKEFFEGKELYSSINPDEAVAYGAAIQAALLSEDVKNVPNLVLQDVTPLSLGVEIKGDVMDVVIPRNTPIPFKKTKNYKTTGDELSAVAIKVYEGERMIASENNLLGLFNLPVRRAPRGLPFQVCYTIDADGILNVSAEEESSGNKKDITITNENGRLSVDEIERMIKEAEFFKSEDMKHMEKLFHGIGSSAAPSAVVPVAAS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00475 428 Pfam Hsp70 protein 1 408 IPR013126 GO:0005524|GO:0140662
Tsu04g00475 428 ProSitePatterns Heat shock hsp70 proteins family signature 2. 73 86 IPR018181 -
Tsu04g00475 428 Gene3D - 62 236 - -
Tsu04g00475 428 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 262 409 IPR029047 -
Tsu04g00475 428 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 408 - -
Tsu04g00475 428 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 254 412 IPR029047 -
Tsu04g00475 428 Gene3D - 1 253 - -
Tsu04g00475 428 PRINTS 70kDa heat shock protein signature 265 284 - -
Tsu04g00475 428 PRINTS 70kDa heat shock protein signature 239 259 - -
Tsu04g00475 428 PRINTS 70kDa heat shock protein signature 16 36 - -
Tsu04g00475 428 PRINTS 70kDa heat shock protein signature 79 89 - -
Tsu04g00475 428 PRINTS 70kDa heat shock protein signature 207 223 - -
Tsu04g00475 428 PRINTS 70kDa heat shock protein signature 344 360 - -
Tsu04g00475 428 ProSitePatterns Heat shock hsp70 proteins family signature 3. 210 224 IPR018181 -
Tsu04g00475 428 SUPERFAMILY Actin-like ATPase domain 1 61 IPR043129 -
Tsu04g00475 428 Gene3D Actin; Chain A, domain 4 105 188 - -
Tsu04g00475 428 PANTHER HEAT SHOCK PROTEIN 70KDA 1 408 IPR013126 GO:0005524|GO:0140662
Tsu04g00475 428 SUPERFAMILY Actin-like ATPase domain 68 256 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00475 Tsu-Chr4 4438835 4440274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00475 1 409 Calmodulin-binding Proteins AT3G12580 66.748 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00475 K03283 - gmx:102667578 560.836