Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00474 ATGGCCAAAGGACCTGCTATTGGAATTGACCTTGGAACAACCTATTCATGTGTAGCAGTTTGGCAGGGACAAAACAATCGTGCAGAGATCATTCACAATGATCAAGGAAACCGAATAACACCTTCTTTTGTTGCTTTCACTAGTGATCTAAGGTTGATTGGTGATGCTGCTAAAAATCAAGCTGCTTCAAATGCATCTGTTTGA 204 0.4069 MAKGPAIGIDLGTTYSCVAVWQGQNNRAEIIHNDQGNRITPSFVAFTSDLRLIGDAAKNQAASNASV 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00474 67 PRINTS 70kDa heat shock protein signature 5 18 - -
Tsu04g00474 67 PRINTS 70kDa heat shock protein signature 35 47 - -
Tsu04g00474 67 PRINTS 70kDa heat shock protein signature 57 65 - -
Tsu04g00474 67 SUPERFAMILY Actin-like ATPase domain 5 65 IPR043129 -
Tsu04g00474 67 ProSitePatterns Heat shock hsp70 proteins family signature 1. 9 16 IPR018181 -
Tsu04g00474 67 PANTHER HEAT SHOCK PROTEIN 70KDA 3 65 IPR013126 GO:0005524|GO:0140662
Tsu04g00474 67 Gene3D - 1 66 - -
Tsu04g00474 67 Pfam Hsp70 protein 6 65 IPR013126 GO:0005524|GO:0140662
Tsu04g00474 67 PANTHER HEAT SHOCK 70 KDA PROTEIN 3 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00474 Tsu-Chr4 4436834 4437037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00474 2 64 Calmodulin-binding Proteins AT5G02500 74.603 5.22e-26 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00474 K03283 - gmx:100804476 112.079