Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00448 ATGGCCGCCGGCATGGACATGTCACTAGACGAACTCATCAAAAAATCCACCGCTAACCGCAAAATCAACGCCGCTCACGGATCAAACCGCCACCTCGCCGTTCGTAATCCGGTCAGAGTGATGCCGTACTCCGTTTCTCAGCTTCAGgaaGTGATGAAAATGCAGGTTGCCAGAGAAGAATGGCGAACAAGTAGCGTTGATGTTCAAGAAATGGTTTTGGATCATGGCGCTGTTCAACCTAAACCTATCACCAAACTCTATCTTTCTAACTTGGATGAAAGGGTTTCCAATGAAGACATTCATCTGTTGTTCTCAGAAGTGGGTGAATTGGAAAGATATTCCATTCACTATGATCAGTTTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTCTGATGCTTTAGCAGCCCTCAAGAGGTACAATAATATGAGGCTTGATGGAAAGGTATTGCAAATTGAGCTTGTTGGAACAAGTTTGGTTACTACTGCTGCCGCCACAACACCTCTTGATCAAAGTAGCTCACTGGGAAGACCAAATGATGGCTTTGTAAGGTGTGGAATTGCGACTCCTGGAACAAGGTTGGTTACTCCTGCTGATATGCCTCCTGCTCTTGGTCGAGATAGCTTACTGGGAATACCTAATGATGTCTTTGTAAGGGGAAAAAGAAAGATTAATAGCTTTGCAGATGGCCATCGTCCAAGAGTGAAGGTCCATACACGAAAGGCATCTTTTAAAGATATTGATCATGGCTTTGAGGGGTATTGCCGCCGTGTAGGAGCAAAACGCCATGTTCCAAAGTTGTCTGTtgaagatcttgatgaagaCTTGGAGAAGTATCGCTCAGAGGCTAAGCagatatgcaaaaaaaattga 885 0.4316 MAAGMDMSLDELIKKSTANRKINAAHGSNRHLAVRNPVRVMPYSVSQLQEVMKMQVAREEWRTSSVDVQEMVLDHGAVQPKPITKLYLSNLDERVSNEDIHLLFSEVGELERYSIHYDQFGRSKGTAEVVFTRQSDALAALKRYNNMRLDGKVLQIELVGTSLVTTAAATTPLDQSSSLGRPNDGFVRCGIATPGTRLVTPADMPPALGRDSLLGIPNDVFVRGKRKINSFADGHRPRVKVHTRKASFKDIDHGFEGYCRRVGAKRHVPKLSVEDLDEDLEKYRSEAKQICKKN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00448 294 SUPERFAMILY RNA-binding domain, RBD 79 159 IPR035979 GO:0003676
Tsu04g00448 294 SMART rrm1_1 85 157 IPR000504 GO:0003723
Tsu04g00448 294 PANTHER THO COMPLEX SUBUNIT 4A 5 286 - -
Tsu04g00448 294 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 286 - -
Tsu04g00448 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 161 IPR000504 GO:0003723
Tsu04g00448 294 Gene3D - 54 185 IPR012677 -
Tsu04g00448 294 Coils Coil 273 293 - -
Tsu04g00448 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00448 Tsu-Chr4 4233089 4235727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00448 86 159 Eukaryotic Initiation Factors Gene Family AT2G23350 35.135 3.85e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00448 K12881 - gmx:100785926 210.305