Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00443 ATGTTGCGATCCACCAGGTTATCTTTTGTTGGTAGCCTATTACTAAACATCCTCCAAGCCAAGACTGAGACTTTTCAGGGGTACTGGTTTATGCCAAATGAGAAACAGAAAGAGATGGAGTTGCAGAATGATCGACGTCATTGGAATGTGTACGTGAAGAAGGTGATGACTGATGAACAAATAGAAACACTTCGAAAACAAATTGCTGCTTATGGAACTATTTGTGAACAACTCGTTCTAATGCATAAAAATCTCTCTCCTAACCAACATCTTACTGGGGCTAGGCTGAGAGGTATGTGTTTTGACCCAATGATCACCAAAATAGGATCGAGACAGCGTTGGTCACCAACCCCTATGCAGCTTCAAACTCTGGAGCGAATATTTAAAGCTGAAACGGGGACTCCAAGCAAGGAAAAGATAAAGGAGATAACCACTAATTTAACCAAGCACGGGCAGATTTCTGAGACCAATGTATATAATTGGTTTCAGAATAGGCGTGCTAGGTCAAAAAGAAAGCAACAGAGTTCAACGCCTACTAGTGTTAATACCGAATCAGAAGTGCCAGCCGAGGTTGATTCCAAAGATGAGAAGACTGAACCTGATGATTTAGTTGTGTCTCAGCCTGCTGAAAATTTGTGCCACAAAAACTCTCATGTGTGCGCAGGCTCACAGTACTTAACTCCAGAATCAGATGACAGTTTGCAATCCTCTAAAAACTTTGATCATGTGCCTGCTATTGATGGGATGCTATCAAACTCAAGGAGCAGCGACTATCTTGCTGAAAAATTGGAAGCACCTGAGAACAAGAACATGGAAGGTTAA 822 0.4185 MLRSTRLSFVGSLLLNILQAKTETFQGYWFMPNEKQKEMELQNDRRHWNVYVKKVMTDEQIETLRKQIAAYGTICEQLVLMHKNLSPNQHLTGARLRGMCFDPMITKIGSRQRWSPTPMQLQTLERIFKAETGTPSKEKIKEITTNLTKHGQISETNVYNWFQNRRARSKRKQQSSTPTSVNTESEVPAEVDSKDEKTEPDDLVVSQPAENLCHKNSHVCAGSQYLTPESDDSLQSSKNFDHVPAIDGMLSNSRSSDYLAEKLEAPENKNMEG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00443 273 MobiDBLite consensus disorder prediction 165 201 - -
Tsu04g00443 273 Gene3D - 113 178 - -
Tsu04g00443 273 MobiDBLite consensus disorder prediction 173 187 - -
Tsu04g00443 273 SMART HOX_1 109 176 IPR001356 GO:0003677
Tsu04g00443 273 MobiDBLite consensus disorder prediction 223 240 - -
Tsu04g00443 273 ProSiteProfiles 'Homeobox' domain profile. 107 172 IPR001356 GO:0003677
Tsu04g00443 273 SUPERFAMILY Homeodomain-like 104 174 IPR009057 -
Tsu04g00443 273 MobiDBLite consensus disorder prediction 223 273 - -
Tsu04g00443 273 Pfam Homeodomain 111 171 IPR001356 GO:0003677
Tsu04g00443 273 PANTHER WUSCHEL-RELATED HOMEOBOX 13 34 270 IPR044559 GO:0003700
Tsu04g00443 273 CDD homeodomain 111 173 IPR001356 GO:0003677
Tsu04g00443 273 PANTHER - 34 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00443 Tsu-Chr4 4179550 4182878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00443 50 204 Wox Gene Family AT4G35550 60.494 6.30e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu04g00443 Homeodomain 3.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00443 - - gmx:100784355 252.292