Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00441 ATGAAGAGGGAAAGAGAGATTGATAGCATGACTATGGCAAATTGTTTGATGTTACTTTCTCGTGGAAGTGATCAATATGAAGCCACATATTCATCTACCATAACTTCAAATAATCGTGTGTTTGAATGCAAAACATGTAATAGACAATTCTCTTCATTTCAAGCACTTGGTGGACATAGGGCAAGTCACAAGAAACCAAGATTGATGGGTGAAAATATTGATGGTCAATTGCTAAATACACCCCCAAAGCCTAAAACACATGAGTGTTCTATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTAGGTGGACATATGAGGAGACATAGAGCTTCAAATTTGAATGGAAATAACAATATGCACAATTCTAATAATACTATGAGTTATAGTAGTGGGGGTGATGGTAGTAGTCTTGATTCTTCACAAAAGATGAAAGGTAGAAACAAGagagttttggttttgaatcTTGATTTGAACTTAACTCCCTTTGAGAATGATTTGGAGATTCTGAAGATTGGAAAGACAACTGCtaatttgattgattatttgCATTGA 555 0.3351 MKREREIDSMTMANCLMLLSRGSDQYEATYSSTITSNNRVFECKTCNRQFSSFQALGGHRASHKKPRLMGENIDGQLLNTPPKPKTHECSICGLEFAIGQALGGHMRRHRASNLNGNNNMHNSNNTMSYSSGGDGSSLDSSQKMKGRNKRVLVLNLDLNLTPFENDLEILKIGKTTANLIDYLH 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00441 184 MobiDBLite consensus disorder prediction 114 142 - -
Tsu04g00441 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Tsu04g00441 184 Pfam C2H2-type zinc finger 40 66 - -
Tsu04g00441 184 Pfam C2H2-type zinc finger 87 111 - -
Tsu04g00441 184 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tsu04g00441 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Tsu04g00441 184 Gene3D Classic Zinc Finger 78 148 - -
Tsu04g00441 184 Gene3D Classic Zinc Finger 20 77 - -
Tsu04g00441 184 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Tsu04g00441 184 SUPERFAMILY beta-beta-alpha zinc fingers 39 109 IPR036236 -
Tsu04g00441 184 MobiDBLite consensus disorder prediction 114 144 - -
Tsu04g00441 184 PANTHER ZINC FINGER PROTEIN ZAT12 10 170 - -
Tsu04g00441 184 SMART c2h2final6 87 109 IPR013087 -
Tsu04g00441 184 SMART c2h2final6 41 63 IPR013087 -
Tsu04g00441 184 PANTHER ZINC FINGER PROTEIN ZAT5 10 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00441 Tsu-Chr4 4162719 4163423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00441 1 181 C2H2 Transcription Factor Family AT2G37430 44.792 1.46e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu04g00441 zf-C2H2_6 7.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00441 - - gmx:100500371 258.07