Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g00439 | atgatgatttcGAGAGGTTTGTTCGGGTGGTCCCCACCGCACGTACAACCGCTCACACCGGTTTCGGAGGTATCGGAGCCACCGGAATCTCCGTCACCGTATATAGACCCCGGAGCTGAAACCTCCGCGCCACAACCGGCGGAAGTTGAAGAGGAAATTGAGGAACAAGATGAAATGGAACCGGCACCAGCTGCGGTACCTTTCTCGAAGCTTTTTGCGTGTGCTGATCGGTTTGATTGGTTTCTCATGGCGGTTGGTTCTGTTGCTGCTGCGGCTCATGGAACCGCTCTTGTAGTTTACTTGCATTACTTTGCTAAGATTATTCATCTCATGCGGATGGATGATCAGCCGTTTTCGTCGCAGGAGCGGTTTGATAGGTTCACTGAGCTTGCTTTAACCATTGTTTACATTGCAGCGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACTGGAGAACGACAAACTGCTGTCATCAGGTCCAAATATGTCCAAGTATTACTAAATCAGGATATGAGTTTTTTCGATACTTACGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTTATCCAGTCTGCTCTCAGCGAAAAAGTTGGAAATTACATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCATTATCAATTGTTGGCAGATTGCTTTGATAACATTAGCAACAGGTCCTTTCATTGTTGCCGCAGGAGGAATATCAAATATATTCCTCCATAGACTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAATTTCCTATGTAAGGACATTGTATGGATTTACAAATGAAACGTTGGCCAAGTACTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGCATATTAATAAGTCTTGTTCAAGGGCTAGGTCTTGGATTCACGTATGGACTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCACGGAAAAGCTCATGGCGGTGAAATAGTAACGGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACAAATTTCTACTCCTTTGAACAAGGGCGGATAGCTGCTTATAGATTATATGAGATGATAAGCCGGTCATCCTCATCTGTTAATGATGATGGCACCTCCCTTGACTCTGTGCAAGGAAATATAGTGTTTCGGAATGTTTATTTCAGTTATCTGTCTCGTCCCGAAATTCCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACACTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAATTTGGAATGGCTGAGGAGCCAGATAGGACTAGTTACCCAGGAGCCTgctttgctcagtttgagtataAGAGATAACATTGCTTATGGGAGGGATGTCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTGAAGAAAGGTTATGACACACAGGTTGGCAGGGCAGGTTTAGCTTTGACTGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTCGATGAAGTAACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCATGAGGCTCTGGATATGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGAAATGCTGATTATATAGCTGTTATGGAGGAGGGTCAACTCGTTGAAATGGGTACTCATGATGAATTGTTGAACCTGAATGGCTTATATGCAGAGCTTCTACGTGGTGAAGAGGCAGCAAAACTTCCCAAGCGGATGCCTACTCGAAACTACAAGGAAACTGCAGTATTTCAAATTGAGAATGATTCTTCAGCGAGCCATAGCTTGAATGAACCATCATCCCCCAAAATGAAGAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCACATTCACAACCTTCAGATGTCATCTATAACTTTCAAGAACCGCCTAAAGTCCTGAGTCCATCATCCGAGAAGGTGCTGGAAAATGGTCAAGCTCCGGATGCAGATAATAAGGAGCCATCCATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCGGAGTTACCCAAGATTGATATACAGTCTGTGCCTCGGCAAAAATCAAATGGTTCTGACCCAGAATCCCCCATATCACCATTTTTAACATCTGATCCTAAGAAAGAACGTTCCCATTCACAATCTTTTAGTAGACCACATAGTCATTCTGATGATGCTTCAGTTACAATGAGAGAAGAAAGGGAAGCACGGAAGCGGAAACCACCATCACTAAAGAAGTTGATCGAGCTTAGTTATGCCGAGTGGCTTTATGCTTTGTTAGGAAGCATTGGTGCTGCTGCATTTGGTTCATTCAATCCCCTTCTAGCTTATGTTGTTGGTCTTGTGGTGGCAGCTTACTATAGAATTGATGATCAACATCACTTAGCACAGGAGGTAGATAAGTGGTGCTTGATCATTGGCTGTATGGGTATTGTAACAGTTATTGCCAACTTTTTGCAGCATTTCTATTTTGGTATTATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTAAGGAATGAAGTTGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGAGATTGGCCAATGATGCTACTTTTGTAAGAGCTGCTTTTAGCAATCGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGCCTTCTCATTGGTGCTGTGCTGCACTGGCGGTTAGCACTGTTGGCTTTTGCAACCCTTCCAATTCTCTGTATTTCTGCAGCTGCCCAGAACTTGTGGCTAGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAAGCATCTTTGGTTCTTGAAGACGCAGTTAGAAATATATACACTGTTGTGGCATTTTGTGCTGGCAATAAGGTAATGGAGCTCTATAGgatgcaattaaaaaaaatatttaagaagaGCTTTCTTCATGGGATGGCGATCGGTTTTGCATTCGGCTTTTCACAGTTTCTACTTTTTGCCTGTAATGCCCTTCTACTTTGGTACACCGCAGTATGTATTAAAAATGGTTACATAAATCCATCCACTGCACTGAGGGAGTACATGGTTTTCTCATTTGCCACATTTGCCCTAGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGGCGAAAATCCCTAATATCAGTGTTTGACATTATAGACCGTGAGCCTAAAATTGATCCTGATGACAATACAGCGTTGAAACCACCCAATGTATATGGAAGCATTGAGTTAAAACATGTTGACTTTTGTTACCCGTCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGTCTCAAAGTGAATGGGGGCCAAACAGTTGCTGTTGTTGGAGTTTCGGGGTCAGGAAAGAGCACTATAATATCTTTGATAGAGAGATTTTATGATCCAGTTGCAGGGCAAATTTTACTCGATGGGAGGGATTTAAAGAGCTATAACTTGAGATGGTTAAGGAGCCACCTCGGTTTGATTCAACAGGAACCTATTATCTTCTCATCAACCATAAGGGaaaacattatatatgcaaggcATAATGCTAGTGAAGCTGAGATGAAAGAGGCAGCGAGAATAGCAAATGCTCATCATTTTATTAGCAGCTTGCCTCATGGTTATGACACTCATATTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTGCTGAAAAACGCACCTATCTTGTTGTTGGATGAAGCAAGTTCATCAGTTGAATCCGAGTCAAGCCGAGTGATACAAGAAGCTCTAGACACACTAATAATGGGAAACAAGACCACTGTTTTAATAGCGCATAGAGCTGCAATGATGAGACACGTGGACAATATTGTAGTGCTTAATGGAGGACGAATAGTGGAAGAGGGAAGTCACGATTCGTTGGTGGCAAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGCTATACTTTATAGAATTGCAATTGGATCTCCTGGAGAGGCTGGTCAACCTGATGCAATTAGAGCTGCATTTGCTGAATTCTTTTCCatgcttatttttgtttttgctggTCAAGGCTCTGGCATGGCTTACAGCAAGATTACAAATAATGGACCTGCAACACCTGCTGGTCTCATAGCTGCATCACTATCTCATGCATTTGGATTATTTGTTGCTGTTTCTGTGGGAGCAAACATCTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCTTTCATTGGAGGAAACATTACACTTTTGAGAAGTATTTTATATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCCTGTATTCTTCTCAAGTCTGCTACTGGTGGAATGGAGACATCAGCTTTTGGTTTATCTTCAAATGTATCAGTATGGAATGCACTAGTTTTTGAAATTGTGATGACATTTGGATTAGTATACACAGTTTATGCAACAGCAGTAGATCCAAAAAAAGGGAATATAGGAATTATTGCTCCACTTGCAATTGGAATTATTGTTGGTGCAAATATCTTAGCTGGTGGAGCATTTGATGGTGCATCAATGAATCCAGCTGTGTCTTTTGGGCCTGCTGTTGTTAGTTGGACATGGACTCATCATTGGGTCTATTGGGTTGGCCCATTTATTGGTGCAGCAATTGCAGCAATAATTTATGATAATATCTTCATTGGTGAGGATGGTCATGAATCTCTCAGTGATTTCTAG | 4944 | 0.4108 | MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYIDPGAETSAPQPAEVEEEIEEQDEMEPAPAAVPFSKLFACADRFDWFLMAVGSVAAAAHGTALVVYLHYFAKIIHLMRMDDQPFSSQERFDRFTELALTIVYIAAGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGIINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAISYVRTLYGFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSSSSVNDDGTSLDSVQGNIVFRNVYFSYLSRPEIPILSGFYLTVPSKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLNLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTMDQIEEAAKIAHAHTFISSLKKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVHEALDMLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLNLNGLYAELLRGEEAAKLPKRMPTRNYKETAVFQIENDSSASHSLNEPSSPKMKKSPSLQRISNVSHSQPSDVIYNFQEPPKVLSPSSEKVLENGQAPDADNKEPSIRRQDSFEMRLPELPKIDIQSVPRQKSNGSDPESPISPFLTSDPKKERSHSQSFSRPHSHSDDASVTMREEREARKRKPPSLKKLIELSYAEWLYALLGSIGAAAFGSFNPLLAYVVGLVVAAYYRIDDQHHLAQEVDKWCLIIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGAVLHWRLALLAFATLPILCISAAAQNLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRMQLKKIFKKSFLHGMAIGFAFGFSQFLLFACNALLLWYTAVCIKNGYINPSTALREYMVFSFATFALVEPFGLAPYILKRRKSLISVFDIIDREPKIDPDDNTALKPPNVYGSIELKHVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQILLDGRDLKSYNLRWLRSHLGLIQQEPIIFSSTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSVESESSRVIQEALDTLIMGNKTTVLIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKAILYRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKITNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFGLSSNVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNIGIIAPLAIGIIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWVGPFIGAAIAAIIYDNIFIGEDGHESLSDF | 1647 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g00439 | 1647 | SMART | AAA_5 | 434 | 816 | IPR003593 | - | |
Tsu04g00439 | 1647 | SMART | AAA_5 | 1183 | 1370 | IPR003593 | - | |
Tsu04g00439 | 1647 | MobiDBLite | consensus disorder prediction | 779 | 814 | - | - | |
Tsu04g00439 | 1647 | PANTHER | ABC TRANSPORTER B FAMILY MEMBER 20-RELATED | 19 | 1401 | - | - | |
Tsu04g00439 | 1647 | Pfam | ABC transporter | 1174 | 1322 | IPR003439 | GO:0005524 | |
Tsu04g00439 | 1647 | Gene3D | - | 1146 | 1397 | IPR027417 | - | |
Tsu04g00439 | 1647 | Gene3D | - | 397 | 650 | IPR027417 | - | |
Tsu04g00439 | 1647 | PANTHER | ABC TRANSPORTER B FAMILY | 19 | 1401 | - | - | |
Tsu04g00439 | 1647 | Gene3D | Glycerol uptake facilitator protein. | 1402 | 1646 | IPR023271 | - | |
Tsu04g00439 | 1647 | CDD | MIP | 1418 | 1621 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Tsu04g00439 | 1647 | MobiDBLite | consensus disorder prediction | 667 | 814 | - | - | |
Tsu04g00439 | 1647 | Pfam | ABC transporter | 428 | 572 | IPR003439 | GO:0005524 | |
Tsu04g00439 | 1647 | MobiDBLite | consensus disorder prediction | 757 | 773 | - | - | |
Tsu04g00439 | 1647 | PRINTS | Major intrinsic protein family signature | 1418 | 1437 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Tsu04g00439 | 1647 | PRINTS | Major intrinsic protein family signature | 1577 | 1599 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Tsu04g00439 | 1647 | PRINTS | Major intrinsic protein family signature | 1499 | 1518 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Tsu04g00439 | 1647 | PRINTS | Major intrinsic protein family signature | 1462 | 1486 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Tsu04g00439 | 1647 | PRINTS | Major intrinsic protein family signature | 1544 | 1562 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Tsu04g00439 | 1647 | PRINTS | Major intrinsic protein family signature | 1614 | 1634 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Tsu04g00439 | 1647 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 828 | 1139 | - | - | |
Tsu04g00439 | 1647 | MobiDBLite | consensus disorder prediction | 667 | 705 | - | - | |
Tsu04g00439 | 1647 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 833 | 1125 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Tsu04g00439 | 1647 | SUPERFAMILY | ABC transporter transmembrane region | 815 | 1141 | IPR036640 | GO:0005524|GO:0016021 | |
Tsu04g00439 | 1647 | Gene3D | ABC transporter type 1, transmembrane domain | 59 | 388 | IPR036640 | GO:0005524|GO:0016021 | |
Tsu04g00439 | 1647 | MobiDBLite | consensus disorder prediction | 732 | 748 | - | - | |
Tsu04g00439 | 1647 | MobiDBLite | consensus disorder prediction | 13 | 60 | - | - | |
Tsu04g00439 | 1647 | Pfam | Major intrinsic protein | 1414 | 1631 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Tsu04g00439 | 1647 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 396 | 641 | IPR027417 | - | |
Tsu04g00439 | 1647 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1145 | 1392 | IPR027417 | - | |
Tsu04g00439 | 1647 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1156 | 1393 | IPR003439 | GO:0005524 | |
Tsu04g00439 | 1647 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 83 | 382 | - | - | |
Tsu04g00439 | 1647 | ProSitePatterns | MIP family signature. | 1480 | 1488 | IPR022357 | - | |
Tsu04g00439 | 1647 | Pfam | ABC transporter transmembrane region | 840 | 1101 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Tsu04g00439 | 1647 | Pfam | ABC transporter transmembrane region | 86 | 357 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Tsu04g00439 | 1647 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 407 | 642 | IPR003439 | GO:0005524 | |
Tsu04g00439 | 1647 | Coils | Coil | 253 | 273 | - | - | |
Tsu04g00439 | 1647 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 84 | 374 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Tsu04g00439 | 1647 | SUPERFAMILY | ABC transporter transmembrane region | 70 | 382 | IPR036640 | GO:0005524|GO:0016021 | |
Tsu04g00439 | 1647 | SUPERFAMILY | Aquaporin-like | 1414 | 1636 | IPR023271 | - | |
Tsu04g00439 | 1647 | Gene3D | ABC transporter type 1, transmembrane domain | 802 | 1144 | IPR036640 | GO:0005524|GO:0016021 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g00439 | Tsu-Chr4 | 4135841 | 4147741 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g00439 | 60 | 698 | Calmodulin-binding Proteins | AT2G36910 | 42.966 | 4.74e-162 | 525 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g00439 | K05658 | - | gmx:100789116 | 2399.01 |