Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00439 atgatgatttcGAGAGGTTTGTTCGGGTGGTCCCCACCGCACGTACAACCGCTCACACCGGTTTCGGAGGTATCGGAGCCACCGGAATCTCCGTCACCGTATATAGACCCCGGAGCTGAAACCTCCGCGCCACAACCGGCGGAAGTTGAAGAGGAAATTGAGGAACAAGATGAAATGGAACCGGCACCAGCTGCGGTACCTTTCTCGAAGCTTTTTGCGTGTGCTGATCGGTTTGATTGGTTTCTCATGGCGGTTGGTTCTGTTGCTGCTGCGGCTCATGGAACCGCTCTTGTAGTTTACTTGCATTACTTTGCTAAGATTATTCATCTCATGCGGATGGATGATCAGCCGTTTTCGTCGCAGGAGCGGTTTGATAGGTTCACTGAGCTTGCTTTAACCATTGTTTACATTGCAGCGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACTGGAGAACGACAAACTGCTGTCATCAGGTCCAAATATGTCCAAGTATTACTAAATCAGGATATGAGTTTTTTCGATACTTACGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTTATCCAGTCTGCTCTCAGCGAAAAAGTTGGAAATTACATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCATTATCAATTGTTGGCAGATTGCTTTGATAACATTAGCAACAGGTCCTTTCATTGTTGCCGCAGGAGGAATATCAAATATATTCCTCCATAGACTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAATTTCCTATGTAAGGACATTGTATGGATTTACAAATGAAACGTTGGCCAAGTACTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGCATATTAATAAGTCTTGTTCAAGGGCTAGGTCTTGGATTCACGTATGGACTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCACGGAAAAGCTCATGGCGGTGAAATAGTAACGGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACAAATTTCTACTCCTTTGAACAAGGGCGGATAGCTGCTTATAGATTATATGAGATGATAAGCCGGTCATCCTCATCTGTTAATGATGATGGCACCTCCCTTGACTCTGTGCAAGGAAATATAGTGTTTCGGAATGTTTATTTCAGTTATCTGTCTCGTCCCGAAATTCCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACACTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAATTTGGAATGGCTGAGGAGCCAGATAGGACTAGTTACCCAGGAGCCTgctttgctcagtttgagtataAGAGATAACATTGCTTATGGGAGGGATGTCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTGAAGAAAGGTTATGACACACAGGTTGGCAGGGCAGGTTTAGCTTTGACTGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTCGATGAAGTAACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCATGAGGCTCTGGATATGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGAAATGCTGATTATATAGCTGTTATGGAGGAGGGTCAACTCGTTGAAATGGGTACTCATGATGAATTGTTGAACCTGAATGGCTTATATGCAGAGCTTCTACGTGGTGAAGAGGCAGCAAAACTTCCCAAGCGGATGCCTACTCGAAACTACAAGGAAACTGCAGTATTTCAAATTGAGAATGATTCTTCAGCGAGCCATAGCTTGAATGAACCATCATCCCCCAAAATGAAGAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCACATTCACAACCTTCAGATGTCATCTATAACTTTCAAGAACCGCCTAAAGTCCTGAGTCCATCATCCGAGAAGGTGCTGGAAAATGGTCAAGCTCCGGATGCAGATAATAAGGAGCCATCCATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCGGAGTTACCCAAGATTGATATACAGTCTGTGCCTCGGCAAAAATCAAATGGTTCTGACCCAGAATCCCCCATATCACCATTTTTAACATCTGATCCTAAGAAAGAACGTTCCCATTCACAATCTTTTAGTAGACCACATAGTCATTCTGATGATGCTTCAGTTACAATGAGAGAAGAAAGGGAAGCACGGAAGCGGAAACCACCATCACTAAAGAAGTTGATCGAGCTTAGTTATGCCGAGTGGCTTTATGCTTTGTTAGGAAGCATTGGTGCTGCTGCATTTGGTTCATTCAATCCCCTTCTAGCTTATGTTGTTGGTCTTGTGGTGGCAGCTTACTATAGAATTGATGATCAACATCACTTAGCACAGGAGGTAGATAAGTGGTGCTTGATCATTGGCTGTATGGGTATTGTAACAGTTATTGCCAACTTTTTGCAGCATTTCTATTTTGGTATTATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTAAGGAATGAAGTTGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGAGATTGGCCAATGATGCTACTTTTGTAAGAGCTGCTTTTAGCAATCGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGCCTTCTCATTGGTGCTGTGCTGCACTGGCGGTTAGCACTGTTGGCTTTTGCAACCCTTCCAATTCTCTGTATTTCTGCAGCTGCCCAGAACTTGTGGCTAGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAAGCATCTTTGGTTCTTGAAGACGCAGTTAGAAATATATACACTGTTGTGGCATTTTGTGCTGGCAATAAGGTAATGGAGCTCTATAGgatgcaattaaaaaaaatatttaagaagaGCTTTCTTCATGGGATGGCGATCGGTTTTGCATTCGGCTTTTCACAGTTTCTACTTTTTGCCTGTAATGCCCTTCTACTTTGGTACACCGCAGTATGTATTAAAAATGGTTACATAAATCCATCCACTGCACTGAGGGAGTACATGGTTTTCTCATTTGCCACATTTGCCCTAGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGGCGAAAATCCCTAATATCAGTGTTTGACATTATAGACCGTGAGCCTAAAATTGATCCTGATGACAATACAGCGTTGAAACCACCCAATGTATATGGAAGCATTGAGTTAAAACATGTTGACTTTTGTTACCCGTCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGTCTCAAAGTGAATGGGGGCCAAACAGTTGCTGTTGTTGGAGTTTCGGGGTCAGGAAAGAGCACTATAATATCTTTGATAGAGAGATTTTATGATCCAGTTGCAGGGCAAATTTTACTCGATGGGAGGGATTTAAAGAGCTATAACTTGAGATGGTTAAGGAGCCACCTCGGTTTGATTCAACAGGAACCTATTATCTTCTCATCAACCATAAGGGaaaacattatatatgcaaggcATAATGCTAGTGAAGCTGAGATGAAAGAGGCAGCGAGAATAGCAAATGCTCATCATTTTATTAGCAGCTTGCCTCATGGTTATGACACTCATATTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCAAGGGTAGTGCTGAAAAACGCACCTATCTTGTTGTTGGATGAAGCAAGTTCATCAGTTGAATCCGAGTCAAGCCGAGTGATACAAGAAGCTCTAGACACACTAATAATGGGAAACAAGACCACTGTTTTAATAGCGCATAGAGCTGCAATGATGAGACACGTGGACAATATTGTAGTGCTTAATGGAGGACGAATAGTGGAAGAGGGAAGTCACGATTCGTTGGTGGCAAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGCTATACTTTATAGAATTGCAATTGGATCTCCTGGAGAGGCTGGTCAACCTGATGCAATTAGAGCTGCATTTGCTGAATTCTTTTCCatgcttatttttgtttttgctggTCAAGGCTCTGGCATGGCTTACAGCAAGATTACAAATAATGGACCTGCAACACCTGCTGGTCTCATAGCTGCATCACTATCTCATGCATTTGGATTATTTGTTGCTGTTTCTGTGGGAGCAAACATCTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCTTTCATTGGAGGAAACATTACACTTTTGAGAAGTATTTTATATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCCTGTATTCTTCTCAAGTCTGCTACTGGTGGAATGGAGACATCAGCTTTTGGTTTATCTTCAAATGTATCAGTATGGAATGCACTAGTTTTTGAAATTGTGATGACATTTGGATTAGTATACACAGTTTATGCAACAGCAGTAGATCCAAAAAAAGGGAATATAGGAATTATTGCTCCACTTGCAATTGGAATTATTGTTGGTGCAAATATCTTAGCTGGTGGAGCATTTGATGGTGCATCAATGAATCCAGCTGTGTCTTTTGGGCCTGCTGTTGTTAGTTGGACATGGACTCATCATTGGGTCTATTGGGTTGGCCCATTTATTGGTGCAGCAATTGCAGCAATAATTTATGATAATATCTTCATTGGTGAGGATGGTCATGAATCTCTCAGTGATTTCTAG 4944 0.4108 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYIDPGAETSAPQPAEVEEEIEEQDEMEPAPAAVPFSKLFACADRFDWFLMAVGSVAAAAHGTALVVYLHYFAKIIHLMRMDDQPFSSQERFDRFTELALTIVYIAAGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGIINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAISYVRTLYGFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSSSSVNDDGTSLDSVQGNIVFRNVYFSYLSRPEIPILSGFYLTVPSKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLNLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTMDQIEEAAKIAHAHTFISSLKKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVHEALDMLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLNLNGLYAELLRGEEAAKLPKRMPTRNYKETAVFQIENDSSASHSLNEPSSPKMKKSPSLQRISNVSHSQPSDVIYNFQEPPKVLSPSSEKVLENGQAPDADNKEPSIRRQDSFEMRLPELPKIDIQSVPRQKSNGSDPESPISPFLTSDPKKERSHSQSFSRPHSHSDDASVTMREEREARKRKPPSLKKLIELSYAEWLYALLGSIGAAAFGSFNPLLAYVVGLVVAAYYRIDDQHHLAQEVDKWCLIIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGAVLHWRLALLAFATLPILCISAAAQNLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRMQLKKIFKKSFLHGMAIGFAFGFSQFLLFACNALLLWYTAVCIKNGYINPSTALREYMVFSFATFALVEPFGLAPYILKRRKSLISVFDIIDREPKIDPDDNTALKPPNVYGSIELKHVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQILLDGRDLKSYNLRWLRSHLGLIQQEPIIFSSTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSVESESSRVIQEALDTLIMGNKTTVLIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKAILYRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKITNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFGLSSNVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNIGIIAPLAIGIIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWVGPFIGAAIAAIIYDNIFIGEDGHESLSDF 1647
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00439 1647 SMART AAA_5 434 816 IPR003593 -
Tsu04g00439 1647 SMART AAA_5 1183 1370 IPR003593 -
Tsu04g00439 1647 MobiDBLite consensus disorder prediction 779 814 - -
Tsu04g00439 1647 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1401 - -
Tsu04g00439 1647 Pfam ABC transporter 1174 1322 IPR003439 GO:0005524
Tsu04g00439 1647 Gene3D - 1146 1397 IPR027417 -
Tsu04g00439 1647 Gene3D - 397 650 IPR027417 -
Tsu04g00439 1647 PANTHER ABC TRANSPORTER B FAMILY 19 1401 - -
Tsu04g00439 1647 Gene3D Glycerol uptake facilitator protein. 1402 1646 IPR023271 -
Tsu04g00439 1647 CDD MIP 1418 1621 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu04g00439 1647 MobiDBLite consensus disorder prediction 667 814 - -
Tsu04g00439 1647 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Tsu04g00439 1647 MobiDBLite consensus disorder prediction 757 773 - -
Tsu04g00439 1647 PRINTS Major intrinsic protein family signature 1418 1437 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu04g00439 1647 PRINTS Major intrinsic protein family signature 1577 1599 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu04g00439 1647 PRINTS Major intrinsic protein family signature 1499 1518 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu04g00439 1647 PRINTS Major intrinsic protein family signature 1462 1486 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu04g00439 1647 PRINTS Major intrinsic protein family signature 1544 1562 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu04g00439 1647 PRINTS Major intrinsic protein family signature 1614 1634 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu04g00439 1647 CDD ABC_6TM_Pgp_ABCB1_D2_like 828 1139 - -
Tsu04g00439 1647 MobiDBLite consensus disorder prediction 667 705 - -
Tsu04g00439 1647 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 833 1125 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g00439 1647 SUPERFAMILY ABC transporter transmembrane region 815 1141 IPR036640 GO:0005524|GO:0016021
Tsu04g00439 1647 Gene3D ABC transporter type 1, transmembrane domain 59 388 IPR036640 GO:0005524|GO:0016021
Tsu04g00439 1647 MobiDBLite consensus disorder prediction 732 748 - -
Tsu04g00439 1647 MobiDBLite consensus disorder prediction 13 60 - -
Tsu04g00439 1647 Pfam Major intrinsic protein 1414 1631 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu04g00439 1647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 641 IPR027417 -
Tsu04g00439 1647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1145 1392 IPR027417 -
Tsu04g00439 1647 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1156 1393 IPR003439 GO:0005524
Tsu04g00439 1647 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Tsu04g00439 1647 ProSitePatterns MIP family signature. 1480 1488 IPR022357 -
Tsu04g00439 1647 Pfam ABC transporter transmembrane region 840 1101 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g00439 1647 Pfam ABC transporter transmembrane region 86 357 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g00439 1647 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Tsu04g00439 1647 Coils Coil 253 273 - -
Tsu04g00439 1647 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g00439 1647 SUPERFAMILY ABC transporter transmembrane region 70 382 IPR036640 GO:0005524|GO:0016021
Tsu04g00439 1647 SUPERFAMILY Aquaporin-like 1414 1636 IPR023271 -
Tsu04g00439 1647 Gene3D ABC transporter type 1, transmembrane domain 802 1144 IPR036640 GO:0005524|GO:0016021
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu04g00439 Tsu-Chr4 4135841 4147741 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00439 60 698 Calmodulin-binding Proteins AT2G36910 42.966 4.74e-162 525
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00439 K05658 - gmx:100789116 2399.01