Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00437 atgactGCCACCTTGAAATCAGGTGGGCCAGTGATTAAGAAGAAAGCAAAGAAGATCAGAACAACAGTCACATTTCACCGACCAAAGACATCGTCAAAGGAAAGGAACTCTAAGTATCCCCACATTAgtgcaacaccaaTGAACACTTTGATCAGgtcTGATGATACTAAGAGAGCCTATGTCCAGTTGACTCCAGATTATGATGCATTGGATATTGCCAACAAAATTGGTATCATCTAA 240 0.3667 MTATLKSGGPVIKKKAKKIRTTVTFHRPKTSSKERNSKYPHISATPMNTLIRSDDTKRAYVQLTPDYDALDIANKIGII 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00437 79 Pfam Ribosomal protein L23, N-terminal domain 13 44 IPR005633 -
Tsu04g00437 79 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 47 79 - -
Tsu04g00437 79 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 5 48 - -
Tsu04g00437 79 PANTHER 60S RIBOSOMAL PROTEIN L23A 5 48 IPR013025 GO:0003735|GO:0005840|GO:0006412
Tsu04g00437 79 Gene3D - 44 79 IPR012677 -
Tsu04g00437 79 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 16 72 IPR012678 GO:0003735|GO:0005840|GO:0006412
Tsu04g00437 79 PANTHER 60S RIBOSOMAL PROTEIN L23A 47 79 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00437 Tsu-Chr4 4126887 4128144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00437 8 79 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 41.406 1.92e-16 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00437 K02893 - vvi:100246504 90.8929