Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00434 ATGGTGGGTAACGACGATGCTCGAGCTCCATGCCACCTTTCAAATTCCCGGAAAATGTTTTGGCGTTCTGCTTCGTGGTCTTCCGCTCGTTCCTCCGCCGCAAACCCTTCCGGAGAATCGGAATCGAATTTCTCAGATCCCAATTCCGGTGTTGAGAATACCAATCGGAGATTCCCTCCACCGCCGTTGACGCCTAGGTCGCAGCAAAATTGTAAGGCACGGTCGTCGTGTTTGCCGCCTCTTCAGCCGCTTTCGATTGCTCGCCGGAGTTTGGATGAGTGGCCGAAAGCGAGTTCCGACGATATTGGGGAGTGGCCACAACCACCTATTACTCCTGGTGGCAGAGGTAATGGTAGTAGCAATAGTAGTAATAGTAATAACAATGGTGAAAGATTGAAACTTGATTTATCTACAATTCAGCAGAATAATAATCCTGATAGTAGGAATAATGGTGGACTTGTGAAGAGAGATAAGATTGCTTTTTTTGATAAGGAATGTTCTAAAGTTGCTGAACATGTTTATCTTGGTGGTGATGCTGTTGCTAAAGATAGggaaattttgaaaagaaatggGATTACTCATGTTTTGAATTGTGTAGGTTTTGTGTGTCCTGAGTATTTCAAAGCTGATTTTGTGTATAGGACTTTGTGGCTACAAGATAGTCCTAGTGAGGATATTACTAGTATTTTGTATGAtgtgtttgattattttgaggATGTTAGGGAAAAGAATGGGAGGGTGTTTGTTCATTGTTGTCAAGGGGTGTCTAGGTCGACGTCTCTTGTTATTGCTTACCTTATGTGGAGAGAAGGGCAGAGTTTCGATGATGCTTTTCAGTTTGTGAAGGCGGCAAGAGGTATTGCTGATCCGAATATGGGTTTTGCTTGTCAGTTATTGCAGTGTCAGAAAAGGGTTCATGCATTTCCTCTTAGTCCTAGCTCTTTGTTGAGAATGTATAGGATTGCTCCTCACTCGCCGTATGATCCTTTGCATCTTGTTCCGAAGATGTTGACGGATCCATCTTCGTCTGCTTTGGACTCTAGGGGTGCTTTTATTGTGCATATTCCTTCGGCGatatatgtttggattggtAAGAAATGTGAAGCTATCATGGAAAGGGATGCTAGAGGGGCTGCGGGTCAGATTGTCCGGTATGAGAGAGTGCAAGGATCGGTTATCATGATTAAGGAAGGTGACGAACCATCTTCTTTTTGGGATGCTTTTTCGAAGTTTTTGCCTTTGATGGAAATGAGTGGTGGCAGTAAAGTAGAAAGTAGCAAATCAAGTGTTAAATATTTTCCTGGTGATAGGAAAGTTGATGCATATGATGTGGATTTTGAAGTTTTTGGAAAAGCCATTGTGGGAGGTTTTGTGCCTCCATTTGCATCATCGGAGAATGAACATGAAACCCATCTTCCTGCAAGAGTGAGTAGTTGGAGTGTTTTAAGGTGGAAAGGTTCCTCTCCTAATGTGAAGGAATTTGTCTCAGCCCCTAAGTTATCCCTCCCGCGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCACAAATTCAACAATTTCCATCACCCTCAATGtcgtcaacatcatcaactttatcatcatcatcctcttcaCCCCCTTTTGTCTCTCCAGATTCCGTTTCTTCTGATTCTAGCACTCACTCAAAGTTTTTGTTAGATTTGTCCCCAGATTCCTCCTCTCTAGTTTCTCCAGTATCTTCATCTTTGTCTAGCTTCTCTAATTTGTCCCTCTCGTCAAATTCTACTTCTCAACCAGCGTCCAAGTGTACAGATATCGATGGTGTCAAGTTATCACATCCATGTTCTCAGTCTGCCTCCTTACCATTGAAAAAACCATCAACTTCCATTGCTGAACGCAGAGGTAATTTATCCAAGTCTTTGAAGTTGCCACCTCTAACGAATAATAACACAAAAGTAATAGATAAACCATCAACTATTCGTTCCAGTCGGGAACATGGTGTTCTTGCTAACAACATCTTTAGCTGTGTGCAAGATTCAGACAGTATTGATTATTTGTTTGATTCTACCAACCATGTCAAAGGTACAAATTCAGTTCAACAGTGTGAGGTGGCATCACGTCCAGGCATTGTTGATAGTGCAGGCTGCAAGGAATCATCATTTCTCAGGAACTGTGTTGAGCCTTCGGGAGATAGTTTGTCAAGAGTAGATTTGAACTCTACCTCATCAAAGGGAGCTAATGAGAGTGGCTCGTTGCAATGTAGTAAGACACAAACTTTAGTATATCGCTGGCCCAGTTTAGAAAAGATCGAGATTTTCGGTGCAAATCATTTGGGCTCGGAGGCTGCTTTTGTCATATTCTCTCCAAGCATACATATGCATACAggaaacattttttatatttgggtAGGGAGTTCTTTCAAACTGGATGCTTCACAGGCTCAGTTAGATAGTGATAGACAGTCTGATTTTCTTGGAGCAGTTGACTGGAACCGAATTGGTTGTGATCTCCTTGCTCAGTTTGATTTACCGAAGAATACAGTCACTAAGATTGTTAAAGAGAATGAAGAACCGCAAGAGTTCCTTGCTTTGCTGAGTTCATTGTAG 2589 0.4059 MVGNDDARAPCHLSNSRKMFWRSASWSSARSSAANPSGESESNFSDPNSGVENTNRRFPPPPLTPRSQQNCKARSSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPITPGGRGNGSSNSSNSNNNGERLKLDLSTIQQNNNPDSRNNGGLVKRDKIAFFDKECSKVAEHVYLGGDAVAKDREILKRNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSSSALDSRGAFIVHIPSAIYVWIGKKCEAIMERDARGAAGQIVRYERVQGSVIMIKEGDEPSSFWDAFSKFLPLMEMSGGSKVESSKSSVKYFPGDRKVDAYDVDFEVFGKAIVGGFVPPFASSENEHETHLPARVSSWSVLRWKGSSPNVKEFVSAPKLSLPRVYSDSMLCIHTSQIQQFPSPSMSSTSSTLSSSSSSPPFVSPDSVSSDSSTHSKFLLDLSPDSSSLVSPVSSSLSSFSNLSLSSNSTSQPASKCTDIDGVKLSHPCSQSASLPLKKPSTSIAERRGNLSKSLKLPPLTNNNTKVIDKPSTIRSSREHGVLANNIFSCVQDSDSIDYLFDSTNHVKGTNSVQQCEVASRPGIVDSAGCKESSFLRNCVEPSGDSLSRVDLNSTSSKGANESGSLQCSKTQTLVYRWPSLEKIEIFGANHLGSEAAFVIFSPSIHMHTGNIFYIWVGSSFKLDASQAQLDSDRQSDFLGAVDWNRIGCDLLAQFDLPKNTVTKIVKENEEPQEFLALLSSL 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00434 862 MobiDBLite consensus disorder prediction 21 55 - -
Tsu04g00434 862 MobiDBLite consensus disorder prediction 92 130 - -
Tsu04g00434 862 ProSiteProfiles Dual specificity protein phosphatase domain profile. 165 307 IPR020422 GO:0006470|GO:0008138
Tsu04g00434 862 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 856 - -
Tsu04g00434 862 ProSitePatterns Tyrosine specific protein phosphatases active site. 249 259 IPR016130 GO:0016311|GO:0016791
Tsu04g00434 862 SMART dsp_5 165 304 IPR020422 GO:0006470|GO:0008138
Tsu04g00434 862 MobiDBLite consensus disorder prediction 722 744 - -
Tsu04g00434 862 MobiDBLite consensus disorder prediction 113 130 - -
Tsu04g00434 862 MobiDBLite consensus disorder prediction 727 744 - -
Tsu04g00434 862 Gene3D Protein tyrosine phosphatase superfamily 139 307 IPR029021 -
Tsu04g00434 862 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 306 IPR029021 -
Tsu04g00434 862 SMART VILL_6 314 411 IPR007122 GO:0051015
Tsu04g00434 862 PANTHER MKPA PROTEIN 1 856 - -
Tsu04g00434 862 MobiDBLite consensus disorder prediction 21 79 - -
Tsu04g00434 862 Gene3D Severin 316 412 IPR029006 -
Tsu04g00434 862 MobiDBLite consensus disorder prediction 521 548 - -
Tsu04g00434 862 SUPERFAMILY Actin depolymerizing proteins 312 416 - -
Tsu04g00434 862 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 224 285 IPR000387 GO:0016311|GO:0016791
Tsu04g00434 862 CDD DSP 166 300 - -
Tsu04g00434 862 Pfam Dual specificity phosphatase, catalytic domain 173 303 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00434 Tsu-Chr4 4117014 4122174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00434 1 201 Protein tyrosine phosphatase (PTP) family AT3G55270 58.537 8.47e-64 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00434 - - mtr:MTR_7g023250 1339.71