Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00428 ATGCGCATGGAGATAACAACCTTCGCATCGCACAGTTACTCCGACCTTCCTTCCGCCGCATCCATGCCGACGACTTCATCTTCATCTCGTCCTATCAGAGTTATTCCTATGCAACACCCGAACACCAATCCTACTTCTTCTTCGTTACCGGCGAATATCGCGATTTCACAATGGGCTTCAAAAGTTCGTGGAATGACTTTGCTTCAATGGCTCGAGTTTTTAATCCCTTGTTATCGTTGGATTCGTATCTATAAATGGCGCGAGTATTTTCAGGTCGATCTAATGGCTGGAATTACCGTCGGTGTTATGCTTGTTCCTCAGTCGATGTCATATGCAAAATTAGCTGGACTTCAACCGATATATGGACTCTACTCTGGTTTTGTGCCCATATTTATGTATGCCATATTTGGGTCCTCTCGCCAGCTTGCAGTCGGCCCAGTAGCATTGGTTTCTCTATTGGTCTCTAATGTTCTAGGCAGCGTAGCTGATACATCCAGTGAATTATACACAGAGTTGGCAATTTTACTGGCCCTTATGGTTGGGATACTGGAGTGCATAATGGGACTATTGAGGCTTGGGTGGCTGATCCGTTTCATTAGCCATTCTGTAATCTCTGGCTTTACAACTGCTTCAGCTATTGTGATTGGTTTATCTCAAGCAAAGTACTTTTTGGGGTATGATATAGAGAGAAGTAGCAAGATTATACCGTTAGTTAAAAGTATAATAGCTGGAGCTGATAAGTTTTCATGGCCCCCTTTTGTACTGGGATCAGTTATGCTTGCAATACTTCTTGTCATGAAACACCTGGGAAAATCAAGGAAATACTTGCGATTCTTGAGAGCTGCAGGTCCTCTTACAGCAGTAGTTCTGGGAACActctttgtaaaaatatttcatcCATCATCAATTTCTTTGgTGGGAGAGATACCTCAGGGCCTCCCCAAATTTTCTGTTCCGAGAGCTTTTGAGTATGCAGAGTCCTTAATTCCAACTGCTTTTCTTATAACAGGTGTGGCTATACTGgaATCAGTTGGAATCGCAAAGGCGTTAGCAGCAAAGAATGGGTATGAGTTGGATTCAAATCAAGAGTTGTTCGGTCTTGGTGTTTCCAATGTTCTCGGTTCATTCTTTTCAGCATACCCTACTACAGGATCCTTTTCCAGATCAGCTGTTAATCATGAAAGTGGTGCGAAATCTGGAGTATCTGGGATAGTTTCAGGGATCATAATAACTTGTGCACTTTTGTTTCTGACGCCATTATTTGAGAGCATACCTCAGGCTGCGCTTGCTGCTATCGTGATCTCTGCTGTGATGGGTCTGGTAGATTATGATGAGGCCATTTTTTTGTGGCGCGTAGATAAAAAAGATTTTCTTCTTTGGACCATTACTAGCAGTATGACATTGTTACTTGGTATTGAGATTGGTGTACTTGTTGGGGTTGGAGCTTCACTTGCTTTTGTAATTCATGAGTCAGCAAATCCTCACAttgCTGTTTTGGGTCGTTTGCCAGGGACAACTGTGTATAGAAATGTTAAACAGTATCCCGAAGCATATACATACAACGGAATTGTAATTGTTCGTATCGATGCTCCTATTTATTTTGCAAATATCAGTTACATAAAGGACAGGTTGCGGGAATATGAAGTTGTTGTTGATAGTTATACAAGACGTGGTCCCGAGGTTGAAAGAATCAATTTTGTGATTATAGAGATGGCACCTGTGACCTACATAGACTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAGTTACGCGACATTCAGATTGCAATATCCAATCCAAACCCAGATATTCTGCTTACTTTGTCTAAATCCGGTCTGGTGGAGTTGATAGGGAAAGAATGGTACTTTGTGAGAGTGCACGATGCTGTTCAAGTTTGCTTGCAGCATGTTCAAAGCTTGAAACCAGGATATGAAAGTTCACAATCATCACGCTCTTCTACATCAGACGACAAACCAAGCTTCTTGTCACAATTATTTAAACCCAGAGAGGAGAGTCGTACACCTACCGACTTAGAGTCTGGTAATGGAAGGCCTCCACTCGCCCCCATCAGAGATTCTCAATCAGAGCCATTGTTGTCAAAAGACCATTGA 2124 0.419 MRMEITTFASHSYSDLPSAASMPTTSSSSRPIRVIPMQHPNTNPTSSSLPANIAISQWASKVRGMTLLQWLEFLIPCYRWIRIYKWREYFQVDLMAGITVGVMLVPQSMSYAKLAGLQPIYGLYSGFVPIFMYAIFGSSRQLAVGPVALVSLLVSNVLGSVADTSSELYTELAILLALMVGILECIMGLLRLGWLIRFISHSVISGFTTASAIVIGLSQAKYFLGYDIERSSKIIPLVKSIIAGADKFSWPPFVLGSVMLAILLVMKHLGKSRKYLRFLRAAGPLTAVVLGTLFVKIFHPSSISLVGEIPQGLPKFSVPRAFEYAESLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVLGSFFSAYPTTGSFSRSAVNHESGAKSGVSGIVSGIIITCALLFLTPLFESIPQAALAAIVISAVMGLVDYDEAIFLWRVDKKDFLLWTITSSMTLLLGIEIGVLVGVGASLAFVIHESANPHIAVLGRLPGTTVYRNVKQYPEAYTYNGIVIVRIDAPIYFANISYIKDRLREYEVVVDSYTRRGPEVERINFVIIEMAPVTYIDSSAVQALKDLYQEYKLRDIQIAISNPNPDILLTLSKSGLVELIGKEWYFVRVHDAVQVCLQHVQSLKPGYESSQSSRSSTSDDKPSFLSQLFKPREESRTPTDLESGNGRPPLAPIRDSQSEPLLSKDH 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00428 707 CDD STAS_SulP_like_sulfate_transporter 514 630 - -
Tsu04g00428 707 PANTHER SULFATE TRANSPORTER 4.1-RELATED 41 671 - -
Tsu04g00428 707 MobiDBLite consensus disorder prediction 647 707 - -
Tsu04g00428 707 PANTHER SULFATE TRANSPORTER 41 671 IPR001902 GO:0015301|GO:0016020|GO:0055085
Tsu04g00428 707 TIGRFAM sulP: sulfate permease 76 633 IPR001902 GO:0015301|GO:0016020|GO:0055085
Tsu04g00428 707 ProSiteProfiles STAS domain profile. 513 637 IPR002645 -
Tsu04g00428 707 Gene3D STAS domain 493 641 IPR036513 -
Tsu04g00428 707 SUPERFAMILY SpoIIaa-like 515 637 IPR036513 -
Tsu04g00428 707 Pfam STAS domain 514 633 IPR002645 -
Tsu04g00428 707 ProSitePatterns SLC26A transporters signature. 119 140 IPR018045 GO:0008271|GO:0008272
Tsu04g00428 707 MobiDBLite consensus disorder prediction 647 665 - -
Tsu04g00428 707 Pfam Sulfate permease family 90 463 IPR011547 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00428 Tsu-Chr4 4048352 4057953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00428 29 643 Inorganic Solute Cotransporters AT5G13550 77.472 0.0 985
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00428 K18059 - gmx:100794754 1138.64