Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00408 ATGGATTCTTCTCTGTTGACTTCTCACTTCAACAACTTCCGAACCGCCGCGAactcttttctctctcaatatGAACCTCTCACTCTGGTTCTAGttcctctcttctctctttttctcgCAAACGTGATTCGTTCGTTTTTCAGTGTTATTCATGATAAAGGACTTAAAGCTACTGTACTAGGGTTCTTCATGAACTTCATCAaATTGATCCCTGGTGTGAAGAGTTATATAGATGCTGAAAAACAGAAGGTTGTGGATAAGTTACAGTCTGATGGTAAATCTAAAAGAGATGGTTGGAAGACAGAGTTGCCAAGCACGGGGTTGGGGACATCAGTCCTTGAGAAAATGAGTGAGGAGAAAAGAAATGATGCAGTTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAGTCCAGTGCACATTTTTCAGTCATAAATGAGGCCTGCTCAATGTTTGCACATACCAATCCCTTGCATTTGGATGTATTCCAGAGTGTTGTACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCCCTTCTTGGAAGTAAAGAAAAGACATCTGGAGGACAGATATGTGGCAATATGACATCAGGTGGGACTGAAAGTATATTATTAGCCGTTAAATCATCTCGTGACTACATGAAATCCAAGAAAGGAATTACAAGACCCGAAATGATAATCCCTGAGTCTGGTCACTCAGCATATGACAAAGCTGCAcattattttaacataaaattatgGCGTGTTCCGGTTAACAAAAATTTCCAAGCCGATGTGAAAGCAATTCGACGTCATATTAACAAAAATACCATTTTGATTGTTGGATCTTCTCCTGGGTTTCCTCATGGGATAATAGACCCCATTGAAGAACTTGGTCAACTAGCATCAAGCTTTGACATTTGTTTTCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTTGGGTACGACATTCCACCTTATGATTTTTCTGTTCAAGGGGTTACTTCAATATCAGCGGATGTGCATAAATATGGGTTAGCTCCCAAAGGAACAAGTATAGTTCTATATAGGAACCATGAAATCAGAAAGCATCAATTTGTTGCAGTTACCGAGTGGTCCGGTGGGTTGTATGTATCTCCAACCATAGCTGGAAGCAGACCTGGAAGCCTTATTGCTGGTGCATGGGCAGCAATGATGTCTCTAGGGAAAGCAGGTTACTTGGAAAATACTAAAGCAATTATGGAAGGATCAAAAAGACTACAAAAAGGCGTAGAGGAGATTCCTGAGTTATTTATCATTGGAAAACCCGATATGACAATCGTGGCTTTTGGATCAAATGTTCTCGATATATTTGAAGTCAATGATATCATGTCATCCAAAGGTTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGTGTGACACTACAACATGTACCAGTAATTGATGACTTTATAAAGGATTTAAAGGAATCTGTGAATACTGTGAAAGAAAATCCAGGTCCAATAAGTGGAGGACTAGCACCTATATATGGAGCCGCCGGGAAAATGCCAGATAGAGGAATGGTCCAGGAATTGCTGGTCGATTTCATGGATGGCACCTGCTAG 1626 0.3998 MDSSLLTSHFNNFRTAANSFLSQYEPLTLVLVPLFSLFLANVIRSFFSVIHDKGLKATVLGFFMNFIKLIPGVKSYIDAEKQKVVDKLQSDGKSKRDGWKTELPSTGLGTSVLEKMSEEKRNDAVWQGKCSGTVYIGGSESSAHFSVINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKTSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAHYFNIKLWRVPVNKNFQADVKAIRRHINKNTILIVGSSPGFPHGIIDPIEELGQLASSFDICFHVDLCLGGFVLPFARELGYDIPPYDFSVQGVTSISADVHKYGLAPKGTSIVLYRNHEIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKAGYLENTKAIMEGSKRLQKGVEEIPELFIIGKPDMTIVAFGSNVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQHVPVIDDFIKDLKESVNTVKENPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMDGTC 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00408 541 SUPERFAMILY PLP-dependent transferases 80 503 IPR015424 -
Tsu04g00408 541 Gene3D Aspartate Aminotransferase, domain 1 110 504 IPR015422 GO:0003824
Tsu04g00408 541 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 21 541 - -
Tsu04g00408 541 Gene3D - 138 405 IPR015421 GO:0003824
Tsu04g00408 541 Pfam Pyridoxal-dependent decarboxylase conserved domain 166 446 IPR002129 GO:0016830|GO:0019752|GO:0030170
Tsu04g00408 541 Gene3D - 101 538 - -
Tsu04g00408 541 PANTHER - 21 541 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00408 157 499 Calmodulin-binding Proteins AT5G17330 24.444 2.76e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00408 K01634 - gmx:100794395 958.747