Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00404 ATGAAGAAAACTTTTCATCACTTTAACTTAACACTTTTCACTACTTTCTTGATCTCCTCACTTACAAATTTCCAAACATGTTTTTCAAACAACGACGTAACGATTCAGTTAAACGACGATGTCCTCGGTTTAATGGTGTTTAAATCAGACCTATATGACCCTTCATCATATCTTTCTTCATGGAATGAAGATGATGTTAATCCATGTTCATGGCAATATGTTAAATGCAATCCACAAACTCAAACAGTTTCTGAACTTTCTTTAGATGGTTTAGGTTTATCAGGTAAAATAGGAAGAGGTCTTGAAAAATTACAACATTTAGTAACACTTTCACTTTCTCATAACAATTTCAGTGGCACTATTAGTCCTTTAGTAACACTTTCAAACACTCTTCAAAAACTTAACCTTAGTCATAACTCATTTTCTGGTCAATTACCTAACTCTTTCATCAACATGAGTTCGATGAGATTCATCGATCTTTCTCACAACTCATTCGCCGGACAATTGTTTGCAACGTTTTTCGATAATTGTTTCAACCTTCGTAGCGTTTCGTTCGCTATGAATTCGTTCGAAGGACAAATTCCTATGTCATTATTATCTAAATGTTCTTTGTTGAATAGTATTAATCTTTCGAATAATCATTTTAGTGGTTATGTTGATTTTTCTAGTGTTTGGTCATTGAATAGGCTTAGAAACTTAGATCTATCAAACAATGCTTTATCTGGTAACTTGGTTAATGGAATTTCAACTTTGCATAATTTGAAAGAGTTAATGTTACAGAATAATCAGTTTTCAGGTTCATTACCAAATGATATTGGATTTTGTCTTCATTTGATTAAGGTTGATTTTAGTACTAATCAGTTTAGTGGTGAATTACCTGAGTCATTAGGAAGATTAAACTCTTTAAGCTATTTAAGAGTTTCAAATAATCTCTTATCTGGTGAATTTCCTCAATGGATTGGTAACTTAACAAGTTTGGAACATTTGGACTTATCTAATAATCAATTCTATGGAAACATTCCTTTGTCATTGGTTTCATGCACAATGTTATCTAAGATTTATCTTAGAGGGAATAGTTTCAATGGTACTATTCCTGAGGGATTGTTTGGATTAGGATTAGAGGAAATGGATTTTTCTCATAATCAGTTAATAGGTTCAATTCCAGCAGGGTCAAATAGGCTATTAGAAACACTTACAAAGTTGGATCTTTCAGTTAATCATCTTCAAGGGAATATTCCTGCAGAAATTGGTCTACTTTCAAAGTTGAGATTCTTGAATTTGTCTTGGAATGATCTTCATTCTCAGATTCCACCTGAATTTGGTCTACTTCAGAATCTAATGGTTTTGGATCTTCGTAATAGCGCTATGTATGGTTTGATTCCGGAAGATACTTGTGATTCAGGAAATTTGGCTGTTCTTCAACTTGATGGAAATTATTTGAAAGGATCTATTCCAGAAGAGATTGGGAATTGTTCATCTCTTTACTTGTTGAGTTTGTCAAACAATAATTTGACAGGTCCAATCCCAAAATCAATGTCAAAGCTAAACAAGCTCAAAATCCTCAAGTTAGAATTCAATGAACTTAGTGGAGAACTACCAATGGAGTTAGGAAAGCTTCAAAATCTTCTTGCTGTGAACATATCACATAACAGCCTCACAGGAAGGCTTCCAATGAGTAGCATATTTCAAAACTTAGACAAAAGTTCTTTGGAAGGAAATTATGGTCTTTGCTCACCCTTGCTTCAAGGTCCATGCAAAATGAATGTATCAAAACCTATAGTTCTGGATCCACATGGCTTTGATAACCAAATGAATCCTGAAAGACCGAGAAATGAATCATCCGAGTCTAGTGGTCCAATTCATCATCACAGATTCCTTAGTATTTCGGCTATTATAGCAATTGCAGCTTCTTTTCTTATTGTGTTAGGAGTTATTGCTATTAGTCTAGTTAATGCTTCTGTAAGGAGAAAGCTAGCATTTGTGGAAAGTGCTTTGGAGAGTATGTGTTCAAGCTCTTCGAGATCAGGAGCACCGGCTACAGGTAAACTCATTCTGTTTGATtcacaatcttcacaagattgGATTAGTAATCCGGAAAACTTGCTCAACAAGGCATCTGAAATCGGTGAAGGAGTTTTTGGAACAGTTTACAAAGTTCCATTAGGATCACAACAAGGAAGAAATGTTGCTGTCAAGAAGCTTATCACATCGAATATACTCCAATTTCCGGAAGACTTCGATAGGGAAGTAAGAATTCTCGGTAAAGCCAGGCACCCGAATTTGATAGCATTGAAAGGTTACTATTGGACTCCTCAGCTTCAGCTTTTAGTATCTGAATTTGCACCAAATGGTAACTTGCAATCCAAGTTACACGAAAAGCTTCCTTCAAGTCCTTCACTTTCTTGGCCTAACAGATTCAAGATTTTACTTGGAACAGCAAAGGGACTTGCTCATTTGCATCATTCGTTCCGACCACCAATCATTCACTACAACATAAAACCAAGCAACATCTTACTCGATGAAAACTTCAACCCTAAGATATCCGATTTCGGGTTAGCTAGGCTTTTAACAAAGCTAGACAAACATGTGATGAGCAACAGATTTCAAAGTGCATTAGGTTATGTAGCACCTGAATTAACTTGTCAAAGCTTAAGGGTCAATGAGAAATGTGATGTCTATGGTTTCGGTGTGATGATACTCGAGTTAGTGACAGGTAGAAGACCAGTGGAGTATGGTGAAGATAATGTGTTGATATTGAATGATCATGTGAGAGTTTTGCTTGAACATGGTAATGTTTTGGAGTGTGTTGATCCAAGTTTGATGAATGAATTTCCCGAGGATGAGGTTTTACCTGTCTTGAAGCTTGCAATGGTATGTACTTCTCAAATACCATCTAGTAGACCTACTATGGCTGAAGTTGTGCAAATATTGCAAGTCATTAAAACTCCTGTTCCTCAAAGGATGGAAGTGTTTTGA 2976 0.3538 MKKTFHHFNLTLFTTFLISSLTNFQTCFSNNDVTIQLNDDVLGLMVFKSDLYDPSSYLSSWNEDDVNPCSWQYVKCNPQTQTVSELSLDGLGLSGKIGRGLEKLQHLVTLSLSHNNFSGTISPLVTLSNTLQKLNLSHNSFSGQLPNSFINMSSMRFIDLSHNSFAGQLFATFFDNCFNLRSVSFAMNSFEGQIPMSLLSKCSLLNSINLSNNHFSGYVDFSSVWSLNRLRNLDLSNNALSGNLVNGISTLHNLKELMLQNNQFSGSLPNDIGFCLHLIKVDFSTNQFSGELPESLGRLNSLSYLRVSNNLLSGEFPQWIGNLTSLEHLDLSNNQFYGNIPLSLVSCTMLSKIYLRGNSFNGTIPEGLFGLGLEEMDFSHNQLIGSIPAGSNRLLETLTKLDLSVNHLQGNIPAEIGLLSKLRFLNLSWNDLHSQIPPEFGLLQNLMVLDLRNSAMYGLIPEDTCDSGNLAVLQLDGNYLKGSIPEEIGNCSSLYLLSLSNNNLTGPIPKSMSKLNKLKILKLEFNELSGELPMELGKLQNLLAVNISHNSLTGRLPMSSIFQNLDKSSLEGNYGLCSPLLQGPCKMNVSKPIVLDPHGFDNQMNPERPRNESSESSGPIHHHRFLSISAIIAIAASFLIVLGVIAISLVNASVRRKLAFVESALESMCSSSSRSGAPATGKLILFDSQSSQDWISNPENLLNKASEIGEGVFGTVYKVPLGSQQGRNVAVKKLITSNILQFPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVSEFAPNGNLQSKLHEKLPSSPSLSWPNRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENFNPKISDFGLARLLTKLDKHVMSNRFQSALGYVAPELTCQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNVLECVDPSLMNEFPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00404 991 Pfam Leucine Rich Repeat 131 150 IPR001611 GO:0005515
Tsu04g00404 991 Pfam Leucine Rich Repeat 325 346 IPR001611 GO:0005515
Tsu04g00404 991 PRINTS Leucine-rich repeat signature 323 336 - -
Tsu04g00404 991 PRINTS Leucine-rich repeat signature 230 243 - -
Tsu04g00404 991 MobiDBLite consensus disorder prediction 598 618 - -
Tsu04g00404 991 Pfam Protein kinase domain 704 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00404 991 SMART LRR_typ_2 323 347 IPR003591 -
Tsu04g00404 991 SMART LRR_typ_2 419 442 IPR003591 -
Tsu04g00404 991 SMART LRR_typ_2 251 275 IPR003591 -
Tsu04g00404 991 SMART LRR_typ_2 539 564 IPR003591 -
Tsu04g00404 991 SMART LRR_typ_2 104 129 IPR003591 -
Tsu04g00404 991 ProSiteProfiles Leucine-rich repeat profile. 106 128 IPR001611 GO:0005515
Tsu04g00404 991 CDD STKc_IRAK 708 978 - -
Tsu04g00404 991 Gene3D Ribonuclease Inhibitor 38 197 IPR032675 -
Tsu04g00404 991 Gene3D Phosphorylase Kinase; domain 1 685 781 - -
Tsu04g00404 991 Gene3D Transferase(Phosphotransferase) domain 1 782 988 - -
Tsu04g00404 991 ProSitePatterns Protein kinases ATP-binding region signature. 708 733 IPR017441 GO:0005524
Tsu04g00404 991 SUPERFAMILY RNI-like 133 559 - -
Tsu04g00404 991 Pfam Leucine rich repeat 469 528 IPR001611 GO:0005515
Tsu04g00404 991 PANTHER BNAA09G02190D PROTEIN 331 989 - -
Tsu04g00404 991 PANTHER BNAA09G02190D PROTEIN 9 343 - -
Tsu04g00404 991 ProSiteProfiles Protein kinase domain profile. 702 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00404 991 Gene3D Ribonuclease Inhibitor 198 295 IPR032675 -
Tsu04g00404 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 331 989 - -
Tsu04g00404 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 343 - -
Tsu04g00404 991 SUPERFAMILY Protein kinase-like (PK-like) 697 981 IPR011009 -
Tsu04g00404 991 Gene3D Ribonuclease Inhibitor 299 592 IPR032675 -
Tsu04g00404 991 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00404 Tsu-Chr4 3831956 3836091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00404 13 988 Receptor kinase-like Gene Family AT3G28040 62.141 0.0 1199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Tsu04g00404 Pkinase 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00404 - - gmx:100795810 1478.38