Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00403 ATGGCTACCGCAAATACAACTAGGTCTTTTCTTCAAGCTGTCGCAACGGAAGAGGTTGCAACTCCTCTTAGACACGTCCAGATGGAAGGATTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCACCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGTAGTACTCTTGAAGTTACTAACTGCTTCCCTTTTCCGATGAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCCAATTACCAGCTTGAAATGATGAGGTGCTTGAGGGAAGTTAACGTGGACAATAATACTGTTGGATGGTATCAGTCTACATTGCTTGGCTCCTATCAAACCGTGGAGCTGATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGACCCATCAAGGGCTGATCAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTCTCAGACTCATTCATGGAACTATACCGCAGCAATAACTTTACTGGCGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTCGAGGAAATACCTATCAAAGTTTCAAATTCTGCCCTTATCAGTGCTTTTATGACAGAGCTGGAACCGGAGACTCCAGTAACCCAGTGTGATTATGATCGTCTGCAACTGTCAACCAGTTCACTAATGGAGAGAAATATGGAATTTTTGATTGAATGCATGGATGACTTGTCAGTAGAACAACAAAAGCTCCAATTCCACTATCGTAGCTTGTCTCGTCAGCAGGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGTCGGAGAATGCGACACGCAGAGCTGCTGGGGAGGAGCCTTTACCCGAGGAAGATCCTGCAAACCCCATTTTCAAGCCACTCCCCGAGCCATCACGACTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTATTGCAACCAAATCAATGGGGTTGCAGGTCAAAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGACGAGTAA 1017 0.4435 MATANTTRSFLQAVATEEVATPLRHVQMEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSTLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSYQTVELIETFMNYQENIRRCVCIIYDPSRADQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPETPVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSVEQQKLQFHYRSLSRQQAQQQAWLQKRRSENATRRAAGEEPLPEEDPANPIFKPLPEPSRLESFLITNQISNYCNQINGVAGQSFNRLYLMKALHDE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00403 338 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 21 338 IPR027524 GO:0003743|GO:0005737|GO:0005852
Tsu04g00403 338 ProSiteProfiles MPN domain profile. 26 159 IPR037518 -
Tsu04g00403 338 SMART pad1_6 25 158 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu04g00403 338 MobiDBLite consensus disorder prediction 262 295 - -
Tsu04g00403 338 Pfam C-terminal region of eIF3h 145 336 IPR045810 -
Tsu04g00403 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 6 337 - -
Tsu04g00403 338 MobiDBLite consensus disorder prediction 269 283 - -
Tsu04g00403 338 CDD MPN_eIF3h 24 287 IPR027524 GO:0003743|GO:0005737|GO:0005852
Tsu04g00403 338 Gene3D Cytidine Deaminase, domain 2 2 215 - -
Tsu04g00403 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 6 337 - -
Tsu04g00403 338 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 127 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00403 89 337 Eukaryotic Initiation Factors Gene Family AT1G10840 83.936 1.34e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00403 K03247 - gmx:100795273 615.92