Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00396 ATGACTCAGGCTGTGGAAGTATTGAATCGATATGGAACGGATCTGGTTGGTGAAGGGAGAGGTTCGGATTCAGAGTGTTTAGCTGGTTTTGAATGTTTTCTAAACATTGTGAGAGCATTAGGAATGGGATCTTGTATAACAGAGGGTGGTTCTGGTTCGCCGCCTTTGTTAACTTATTCGCAGGAATTGAATGTTGATGGTGGGAAGAGGAGGAGATTGAGAGGTTCCTCTACAATGGATTATAAGGTACCTGGTAGAATGTTCTTAAATGGTTCAAGTGAGATTGCTTCTATGTATTGTAAACAAGGTAAAAAAGGGATTAACCAAGATGCTATGCTTGTTTGGGAGAACTTTGGTTCAAAGGAGGACACCGTTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCATAGGGTTGCAAAGAAAGTTAGGGATTCGTTCCCTTTAAAGCTTAATGCACAATGGGATTTGCATTGTAAGAATAAAGATGGattcaatgatcaaaatggTGCTGCCACAAGTTATAATTCTGAGGAGCAAATTAGACTGGTTGACGAGAACTTTGATCATGAGTTCGATGAAACATATACTATCTCGGCACTAAGAGAATCCTATTTGAAGGCTAGCAAGATTATGGACAAAGAACTGAAACTGCATCGTGATATTGATTGCTTTTGCAGTGGGACTACAGCAGTTACCTTGATCAAGCAGGGGCCGGATCTTGTTGTTGGAAATGTGGGGGATTCAAGAGCTGTACTGGGAACCCGAGACCATGACAATTCTCTTATTGCTGTTCAGTTGACCATTGACCTTAAGCCTAATCTTCCAAAGGAAGAAGAGAGGATTAAGCTTCGCAAAGGAAGGGTTTTTTCCCTGAAGAATGAACCGGATGTGGCTAGAGTTTGGCTGCCTAACTCTGATTTCCCAGGTCTGGCTATGGCACGGGCTTTTGGAGATTTTTGCCTGAAGGACGTTGGATTGATTTCTGTTCCAGATGTTTCATATCGCCGCCTTACAGAGAAGGATGAATTTGTTGTGTTAGCAACAGATGGGATTTGGGATGTTTTATCAAACCAAGAAGTTGTGGAGATTGTGGCAGCTGCACCACGGTCTATTGCTGCTCGAGTACTGGTTGAGTCAGCTGTTCGTTCTTGGAGGGCAAAATTTCCTTTCTGTAAGGTTGATGATTGTGCTGCAGTGTGTCTCTTCCTTAATTCAAATACAGAGTCAAAGGCAGAACATGCCACAACTGAGTTGATGCCAGATGCATCAAAGAATCCCGTTGATCAATCATCTCTACCTAGTGAGAATGGAATTGGAGTGGAAGCCGAAAAACAGCCTTAA 1347 0.4209 MTQAVEVLNRYGTDLVGEGRGSDSECLAGFECFLNIVRALGMGSCITEGGSGSPPLLTYSQELNVDGGKRRRLRGSSTMDYKVPGRMFLNGSSEIASMYCKQGKKGINQDAMLVWENFGSKEDTVFCGVFDGHGPYGHRVAKKVRDSFPLKLNAQWDLHCKNKDGFNDQNGAATSYNSEEQIRLVDENFDHEFDETYTISALRESYLKASKIMDKELKLHRDIDCFCSGTTAVTLIKQGPDLVVGNVGDSRAVLGTRDHDNSLIAVQLTIDLKPNLPKEEERIKLRKGRVFSLKNEPDVARVWLPNSDFPGLAMARAFGDFCLKDVGLISVPDVSYRRLTEKDEFVVLATDGIWDVLSNQEVVEIVAAAPRSIAARVLVESAVRSWRAKFPFCKVDDCAAVCLFLNSNTESKAEHATTELMPDASKNPVDQSSLPSENGIGVEAEKQP 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00396 448 CDD PP2Cc 95 405 IPR001932 -
Tsu04g00396 448 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 42 413 - -
Tsu04g00396 448 Pfam Protein phosphatase 2C 113 379 IPR001932 -
Tsu04g00396 448 Gene3D - 91 414 IPR036457 -
Tsu04g00396 448 SMART PP2C_4 89 403 IPR001932 -
Tsu04g00396 448 MobiDBLite consensus disorder prediction 414 448 - -
Tsu04g00396 448 PANTHER ALPHABET, ISOFORM E-RELATED 42 413 - -
Tsu04g00396 448 SUPERFAMILY PP2C-like 93 407 IPR036457 -
Tsu04g00396 448 MobiDBLite consensus disorder prediction 424 438 - -
Tsu04g00396 448 ProSiteProfiles PPM-type phosphatase domain profile. 95 405 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00396 Tsu-Chr4 3753264 3758571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00396 42 418 PP2C-type Phosphatase Gene Family AT3G02750 54.402 6.03e-145 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00396 - - gmx:100802479 717.613