Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00393 ATGGCATTGCCTCCAAATTCCGACGAAAACGGCGGAGGAGTTGCCACCGAAGAAGACACCACCATTGATATTCACACAACTCATGGAACCCCAATTCGTTACCTCCCGCTTGACCATCTCTACTCGTCTACATCACCGTGTAGTGGTTCTTCCAATGTCATGTCAAAAAAAGTTAAAGCTCGTAAACTCAACAACGAGATTCACTTCAATAACGGCGAAATCGATTCACAGGTTAACGATGATGTTGACGATGACGATGAGAAAGAGATTTCGAAAACGACGACGTCTTCTATGGTCGTTTATGATAAACCACCGGTTTTATATGTTTACTCTCGGAGACGAAAGAGGAGTTCTTTTCCGGCTTCGGATTCAGAGAGGACGGTGCTGAAAAGGAGAAGAATTGGAAGCAATGAGCTGGAAAGTTTAGGGATTGACTGGAATGCTTTGGGGAAATTGGATGGACCTAGGTTGAGAGAATGTCGCAATCAAATTGGGAATTCTGCTGGGTTTAatgggaagaagaagaagtttgGTTCTGGTGTTAAGCTTCCTAACTTGATGCCTGATTCTTACACTTTGAAGAGATGGGTCATGTTGAGCTTTGATGATGCCGATCCCGAGGCTTTTGTCGGACTGAGATGCAAGGTTTACTGGCCCATGGATTTAAAATCATACACTGGCCAAGTTAAACGTTACGATAGGGAAGCTAAGATACATCATATCGAGTATGATGATGGAGACGAAGAAAAATTAGTTCTGTCaaatgaaaatgttaaatacCATGTTTCCCGTAACGATATGCAACGTTTAAAATTGAGTTACGCCAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTCGCACTGGCTGCAAGTATGAACGACTGTCAAGACTTTGAGCCTGGGGATATCGTATGGGCCAAGCTTACAGGTTATGCAATGTGGCCAGCTGTTGTTTTGGATGAATCATTTGCCAGCAATTGCAAGGGTTTAAAAACATTCGTAGGGGGGAGATCAGTTCCTGTTCAATTTTTTGGCACTCACGACTTTGCAAGAGTTCGAGTGCAACAGGTGAAATCATTTCTCAGTGGACTCCTAACCGATCTGCACTCAAAGTGCAAGAAGCAGAGTTTCATTGATGGTATAGAAGAGGCAAAAAGGTATTTAAGTGCACTGGAGCTTCCTCAGGAGATGATAGAATTGCGGAAAAGATGTACAGCTGATGACTGTAACAATGTAAGTGGAGAGGATGGAGGATGTACAGATTCGGGTGAAGACTATATAAATGGCAAAGGGACTTGGGAAGCAGATCAAAACACCGTCTCTTTTCCTTATGAAGTGGGAGACTTGCGGATTCTAAGCCTTggaAAGATAGTTGGAGATTCTACTGCTTTTCGGAATGGAAAATCCATTTGGCCTGAAGGGTACACAGCAATGAGGAAGTTCACTTCAGTTACAGACCTTAAAGTATCCGTTCCGTATAAGATGGAGGTTTTAAGAGATCCAGAATCCAGATTCAGACCACTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGTTATACACCGTCTACTTGCTGGGATCAAGTATACGAAAGGATAAAGAAATTGGAAAAGGTTGTTTCTGAAGGTTCTGTTGCTGATGGTGGTGTCGAAAGTGGCTATGAATCTGGCTCTGATATGTTTGGTTTCTCCAAACCGGAAGTGGCTGAACTTATAAAGGGATTATCTAAATCCAAAGTCTCTTCGAAGAAATCAATCCGCAAGTCAGGTTCCAGTTTGCCTGTTGGTTATAGACAAGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCATATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTTAATGGAGTGCTATGGTTATGCAACTTATGTCGTTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACAACGGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAATAGAATCAGCAAgGACCGTTGGAAGTTGTTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCAGCTGGTCTTTGCGTTGAGcTTGAGAATGAGGACAGGCTCTATCTACTTTCCgtagatgatgatgaggatCAATGCATTCGCTTACTTTCTTTCTGCAAAAAACATAGGCAACCATCTCATGATCATTCTGTAGCTGACGAACGTGTGCCGGTTATTGGTCAATGTTCAGACTATGAACCACCACTCAATCCATCTGGTTGTGCCCGAAGTGAGCCATATGATTACTTTGGTAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTTCATCGCTGAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTTGGTGGATACTGCCAACATGGGTTGTTGAACGACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCGAACAGAGACTGAGGACCTCTATGGTTGATGCTGTCGACAGCATACTTACTGTTGCTGAGAAATATAAGTACATGAGGGAAACCTTTCGGAAACAGTTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGAGATATGGTGATTGAATACACTGGTGAACTTGTTAGACCTTCTATTGCTGACCGGAGAGAGCGATTTATATACAATTCTTTGGTGGGTGCTGGAACATATATGTTTCGGATCGATGATGAACGGGTCATCGATGCCACTAGAGCTGGAAGCATTGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTCATTAGTGTTAACGGCGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAATGGGAAGAGCTTACATATGATTATagATTTTTCTCAATAGATGAACGGCTTTCTTGTTACTGTGGCTTCCAAAAATGTCGAGGTATAGTAAATGACACTGAGGCAGAAGAGCGAGCTGCTACTGTATATGCACCACGGAGTGAATTAGTTGATTGGAAAGGAGAATGA 3246 0.4202 MALPPNSDENGGGVATEEDTTIDIHTTHGTPIRYLPLDHLYSSTSPCSGSSNVMSKKVKARKLNNEIHFNNGEIDSQVNDDVDDDDEKEISKTTTSSMVVYDKPPVLYVYSRRRKRSSFPASDSERTVLKRRRIGSNELESLGIDWNALGKLDGPRLRECRNQIGNSAGFNGKKKKFGSGVKLPNLMPDSYTLKRWVMLSFDDADPEAFVGLRCKVYWPMDLKSYTGQVKRYDREAKIHHIEYDDGDEEKLVLSNENVKYHVSRNDMQRLKLSYAKVRDNNVSDYDVEEMLALAASMNDCQDFEPGDIVWAKLTGYAMWPAVVLDESFASNCKGLKTFVGGRSVPVQFFGTHDFARVRVQQVKSFLSGLLTDLHSKCKKQSFIDGIEEAKRYLSALELPQEMIELRKRCTADDCNNVSGEDGGCTDSGEDYINGKGTWEADQNTVSFPYEVGDLRILSLGKIVGDSTAFRNGKSIWPEGYTAMRKFTSVTDLKVSVPYKMEVLRDPESRFRPLFRVTVDGGEQFNGYTPSTCWDQVYERIKKLEKVVSEGSVADGGVESGYESGSDMFGFSKPEVAELIKGLSKSKVSSKKSIRKSGSSLPVGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLNRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHDHSVADERVPVIGQCSDYEPPLNPSGCARSEPYDYFGRRGRKEPEALAASSLKRLFVENQPYLVGGYCQHGLLNDLEPSGRGVCSKFFCSEQRLRTSMVDAVDSILTVAEKYKYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRRERFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLSCYCGFQKCRGIVNDTEAEERAATVYAPRSELVDWKGE 1081
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00393 1081 Pfam SET domain 928 1034 IPR001214 GO:0005515
Tsu04g00393 1081 SMART fyrc_3 513 601 IPR003889 GO:0005634
Tsu04g00393 1081 PANTHER PHD FINGER PROTEINS 14 1078 - -
Tsu04g00393 1081 ProSiteProfiles Zinc finger PHD-type profile. 614 665 IPR019787 -
Tsu04g00393 1081 MobiDBLite consensus disorder prediction 71 91 - -
Tsu04g00393 1081 SUPERFAMILY FYVE/PHD zinc finger 609 678 IPR011011 -
Tsu04g00393 1081 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 14 1078 - -
Tsu04g00393 1081 ProSiteProfiles FYR domain FYRC motif profile. 509 596 IPR003889 GO:0005634
Tsu04g00393 1081 SMART PHD_3 616 663 IPR001965 -
Tsu04g00393 1081 SMART PHD_3 726 792 IPR001965 -
Tsu04g00393 1081 ProSiteProfiles SET domain profile. 917 1035 IPR001214 GO:0005515
Tsu04g00393 1081 Pfam PWWP domain 306 393 IPR000313 -
Tsu04g00393 1081 SUPERFAMILY SET domain 915 1054 IPR046341 -
Tsu04g00393 1081 Pfam F/Y rich C-terminus 511 585 IPR003889 GO:0005634
Tsu04g00393 1081 ProSitePatterns Zinc finger PHD-type signature. 617 662 IPR019786 -
Tsu04g00393 1081 Pfam PHD-finger 629 663 - -
Tsu04g00393 1081 Gene3D - 293 403 - -
Tsu04g00393 1081 Pfam F/Y-rich N-terminus 452 502 IPR003888 GO:0005634
Tsu04g00393 1081 SMART PWWP_4 303 366 IPR000313 -
Tsu04g00393 1081 ProSiteProfiles PWWP domain profile. 305 368 IPR000313 -
Tsu04g00393 1081 SMART fyrn_3 461 505 IPR003888 GO:0005634
Tsu04g00393 1081 ProSiteProfiles FYR domain FYRN motif profile. 446 505 IPR003888 GO:0005634
Tsu04g00393 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 662 IPR013083 -
Tsu04g00393 1081 Gene3D - 206 256 - -
Tsu04g00393 1081 ProSiteProfiles Post-SET domain profile. 1041 1057 IPR003616 -
Tsu04g00393 1081 ProSiteProfiles Extended PHD (ePHD) domain profile. 668 792 IPR034732 -
Tsu04g00393 1081 SUPERFAMILY Tudor/PWWP/MBT 298 397 - -
Tsu04g00393 1081 Gene3D - 447 588 - -
Tsu04g00393 1081 CDD ePHD_ATX1_2_like 677 791 IPR041956 -
Tsu04g00393 1081 CDD PHD_ATX1_2_like 616 662 IPR042010 -
Tsu04g00393 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 794 IPR013083 -
Tsu04g00393 1081 SMART set_7 917 1041 IPR001214 GO:0005515
Tsu04g00393 1081 CDD SET_SETD1-like 904 1053 - -
Tsu04g00393 1081 Pfam PHD-zinc-finger like domain 670 791 - -
Tsu04g00393 1081 Gene3D SET domain 880 1070 IPR046341 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu04g00393 Tsu-Chr4 3701742 3714523 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00393 597 762 C2H2 Transcription Factor Family AT3G14740 38.596 6.79e-27 111
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu04g00393 zf-HC5HC2H_2 4.5e-33 CL0390
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00393 - - gmx:100806736 1761.89