Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g00393 | ATGGCATTGCCTCCAAATTCCGACGAAAACGGCGGAGGAGTTGCCACCGAAGAAGACACCACCATTGATATTCACACAACTCATGGAACCCCAATTCGTTACCTCCCGCTTGACCATCTCTACTCGTCTACATCACCGTGTAGTGGTTCTTCCAATGTCATGTCAAAAAAAGTTAAAGCTCGTAAACTCAACAACGAGATTCACTTCAATAACGGCGAAATCGATTCACAGGTTAACGATGATGTTGACGATGACGATGAGAAAGAGATTTCGAAAACGACGACGTCTTCTATGGTCGTTTATGATAAACCACCGGTTTTATATGTTTACTCTCGGAGACGAAAGAGGAGTTCTTTTCCGGCTTCGGATTCAGAGAGGACGGTGCTGAAAAGGAGAAGAATTGGAAGCAATGAGCTGGAAAGTTTAGGGATTGACTGGAATGCTTTGGGGAAATTGGATGGACCTAGGTTGAGAGAATGTCGCAATCAAATTGGGAATTCTGCTGGGTTTAatgggaagaagaagaagtttgGTTCTGGTGTTAAGCTTCCTAACTTGATGCCTGATTCTTACACTTTGAAGAGATGGGTCATGTTGAGCTTTGATGATGCCGATCCCGAGGCTTTTGTCGGACTGAGATGCAAGGTTTACTGGCCCATGGATTTAAAATCATACACTGGCCAAGTTAAACGTTACGATAGGGAAGCTAAGATACATCATATCGAGTATGATGATGGAGACGAAGAAAAATTAGTTCTGTCaaatgaaaatgttaaatacCATGTTTCCCGTAACGATATGCAACGTTTAAAATTGAGTTACGCCAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTCGCACTGGCTGCAAGTATGAACGACTGTCAAGACTTTGAGCCTGGGGATATCGTATGGGCCAAGCTTACAGGTTATGCAATGTGGCCAGCTGTTGTTTTGGATGAATCATTTGCCAGCAATTGCAAGGGTTTAAAAACATTCGTAGGGGGGAGATCAGTTCCTGTTCAATTTTTTGGCACTCACGACTTTGCAAGAGTTCGAGTGCAACAGGTGAAATCATTTCTCAGTGGACTCCTAACCGATCTGCACTCAAAGTGCAAGAAGCAGAGTTTCATTGATGGTATAGAAGAGGCAAAAAGGTATTTAAGTGCACTGGAGCTTCCTCAGGAGATGATAGAATTGCGGAAAAGATGTACAGCTGATGACTGTAACAATGTAAGTGGAGAGGATGGAGGATGTACAGATTCGGGTGAAGACTATATAAATGGCAAAGGGACTTGGGAAGCAGATCAAAACACCGTCTCTTTTCCTTATGAAGTGGGAGACTTGCGGATTCTAAGCCTTggaAAGATAGTTGGAGATTCTACTGCTTTTCGGAATGGAAAATCCATTTGGCCTGAAGGGTACACAGCAATGAGGAAGTTCACTTCAGTTACAGACCTTAAAGTATCCGTTCCGTATAAGATGGAGGTTTTAAGAGATCCAGAATCCAGATTCAGACCACTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGTTATACACCGTCTACTTGCTGGGATCAAGTATACGAAAGGATAAAGAAATTGGAAAAGGTTGTTTCTGAAGGTTCTGTTGCTGATGGTGGTGTCGAAAGTGGCTATGAATCTGGCTCTGATATGTTTGGTTTCTCCAAACCGGAAGTGGCTGAACTTATAAAGGGATTATCTAAATCCAAAGTCTCTTCGAAGAAATCAATCCGCAAGTCAGGTTCCAGTTTGCCTGTTGGTTATAGACAAGTTCATATTAATTGGTTTGATCTCGATAAGTGCAATGTGTGCCATATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTTAATGGAGTGCTATGGTTATGCAACTTATGTCGTTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACAACGGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAATAGAATCAGCAAgGACCGTTGGAAGTTGTTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCAGCTGGTCTTTGCGTTGAGcTTGAGAATGAGGACAGGCTCTATCTACTTTCCgtagatgatgatgaggatCAATGCATTCGCTTACTTTCTTTCTGCAAAAAACATAGGCAACCATCTCATGATCATTCTGTAGCTGACGAACGTGTGCCGGTTATTGGTCAATGTTCAGACTATGAACCACCACTCAATCCATCTGGTTGTGCCCGAAGTGAGCCATATGATTACTTTGGTAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTTCATCGCTGAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTTGGTGGATACTGCCAACATGGGTTGTTGAACGACCTAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCGAACAGAGACTGAGGACCTCTATGGTTGATGCTGTCGACAGCATACTTACTGTTGCTGAGAAATATAAGTACATGAGGGAAACCTTTCGGAAACAGTTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGAGATATGGTGATTGAATACACTGGTGAACTTGTTAGACCTTCTATTGCTGACCGGAGAGAGCGATTTATATACAATTCTTTGGTGGGTGCTGGAACATATATGTTTCGGATCGATGATGAACGGGTCATCGATGCCACTAGAGCTGGAAGCATTGCTCATTTAATTAATCATTCCTGTGCACCAAATTGCTATTCAAGAGTCATTAGTGTTAACGGCGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAATGGGAAGAGCTTACATATGATTATagATTTTTCTCAATAGATGAACGGCTTTCTTGTTACTGTGGCTTCCAAAAATGTCGAGGTATAGTAAATGACACTGAGGCAGAAGAGCGAGCTGCTACTGTATATGCACCACGGAGTGAATTAGTTGATTGGAAAGGAGAATGA | 3246 | 0.4202 | MALPPNSDENGGGVATEEDTTIDIHTTHGTPIRYLPLDHLYSSTSPCSGSSNVMSKKVKARKLNNEIHFNNGEIDSQVNDDVDDDDEKEISKTTTSSMVVYDKPPVLYVYSRRRKRSSFPASDSERTVLKRRRIGSNELESLGIDWNALGKLDGPRLRECRNQIGNSAGFNGKKKKFGSGVKLPNLMPDSYTLKRWVMLSFDDADPEAFVGLRCKVYWPMDLKSYTGQVKRYDREAKIHHIEYDDGDEEKLVLSNENVKYHVSRNDMQRLKLSYAKVRDNNVSDYDVEEMLALAASMNDCQDFEPGDIVWAKLTGYAMWPAVVLDESFASNCKGLKTFVGGRSVPVQFFGTHDFARVRVQQVKSFLSGLLTDLHSKCKKQSFIDGIEEAKRYLSALELPQEMIELRKRCTADDCNNVSGEDGGCTDSGEDYINGKGTWEADQNTVSFPYEVGDLRILSLGKIVGDSTAFRNGKSIWPEGYTAMRKFTSVTDLKVSVPYKMEVLRDPESRFRPLFRVTVDGGEQFNGYTPSTCWDQVYERIKKLEKVVSEGSVADGGVESGYESGSDMFGFSKPEVAELIKGLSKSKVSSKKSIRKSGSSLPVGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLNRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHDHSVADERVPVIGQCSDYEPPLNPSGCARSEPYDYFGRRGRKEPEALAASSLKRLFVENQPYLVGGYCQHGLLNDLEPSGRGVCSKFFCSEQRLRTSMVDAVDSILTVAEKYKYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRRERFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLSCYCGFQKCRGIVNDTEAEERAATVYAPRSELVDWKGE | 1081 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g00393 | 1081 | Pfam | SET domain | 928 | 1034 | IPR001214 | GO:0005515 | |
Tsu04g00393 | 1081 | SMART | fyrc_3 | 513 | 601 | IPR003889 | GO:0005634 | |
Tsu04g00393 | 1081 | PANTHER | PHD FINGER PROTEINS | 14 | 1078 | - | - | |
Tsu04g00393 | 1081 | ProSiteProfiles | Zinc finger PHD-type profile. | 614 | 665 | IPR019787 | - | |
Tsu04g00393 | 1081 | MobiDBLite | consensus disorder prediction | 71 | 91 | - | - | |
Tsu04g00393 | 1081 | SUPERFAMILY | FYVE/PHD zinc finger | 609 | 678 | IPR011011 | - | |
Tsu04g00393 | 1081 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 | 14 | 1078 | - | - | |
Tsu04g00393 | 1081 | ProSiteProfiles | FYR domain FYRC motif profile. | 509 | 596 | IPR003889 | GO:0005634 | |
Tsu04g00393 | 1081 | SMART | PHD_3 | 616 | 663 | IPR001965 | - | |
Tsu04g00393 | 1081 | SMART | PHD_3 | 726 | 792 | IPR001965 | - | |
Tsu04g00393 | 1081 | ProSiteProfiles | SET domain profile. | 917 | 1035 | IPR001214 | GO:0005515 | |
Tsu04g00393 | 1081 | Pfam | PWWP domain | 306 | 393 | IPR000313 | - | |
Tsu04g00393 | 1081 | SUPERFAMILY | SET domain | 915 | 1054 | IPR046341 | - | |
Tsu04g00393 | 1081 | Pfam | F/Y rich C-terminus | 511 | 585 | IPR003889 | GO:0005634 | |
Tsu04g00393 | 1081 | ProSitePatterns | Zinc finger PHD-type signature. | 617 | 662 | IPR019786 | - | |
Tsu04g00393 | 1081 | Pfam | PHD-finger | 629 | 663 | - | - | |
Tsu04g00393 | 1081 | Gene3D | - | 293 | 403 | - | - | |
Tsu04g00393 | 1081 | Pfam | F/Y-rich N-terminus | 452 | 502 | IPR003888 | GO:0005634 | |
Tsu04g00393 | 1081 | SMART | PWWP_4 | 303 | 366 | IPR000313 | - | |
Tsu04g00393 | 1081 | ProSiteProfiles | PWWP domain profile. | 305 | 368 | IPR000313 | - | |
Tsu04g00393 | 1081 | SMART | fyrn_3 | 461 | 505 | IPR003888 | GO:0005634 | |
Tsu04g00393 | 1081 | ProSiteProfiles | FYR domain FYRN motif profile. | 446 | 505 | IPR003888 | GO:0005634 | |
Tsu04g00393 | 1081 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 608 | 662 | IPR013083 | - | |
Tsu04g00393 | 1081 | Gene3D | - | 206 | 256 | - | - | |
Tsu04g00393 | 1081 | ProSiteProfiles | Post-SET domain profile. | 1041 | 1057 | IPR003616 | - | |
Tsu04g00393 | 1081 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 668 | 792 | IPR034732 | - | |
Tsu04g00393 | 1081 | SUPERFAMILY | Tudor/PWWP/MBT | 298 | 397 | - | - | |
Tsu04g00393 | 1081 | Gene3D | - | 447 | 588 | - | - | |
Tsu04g00393 | 1081 | CDD | ePHD_ATX1_2_like | 677 | 791 | IPR041956 | - | |
Tsu04g00393 | 1081 | CDD | PHD_ATX1_2_like | 616 | 662 | IPR042010 | - | |
Tsu04g00393 | 1081 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 663 | 794 | IPR013083 | - | |
Tsu04g00393 | 1081 | SMART | set_7 | 917 | 1041 | IPR001214 | GO:0005515 | |
Tsu04g00393 | 1081 | CDD | SET_SETD1-like | 904 | 1053 | - | - | |
Tsu04g00393 | 1081 | Pfam | PHD-zinc-finger like domain | 670 | 791 | - | - | |
Tsu04g00393 | 1081 | Gene3D | SET domain | 880 | 1070 | IPR046341 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g00393 | Tsu-Chr4 | 3701742 | 3714523 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g00393 | 597 | 762 | C2H2 Transcription Factor Family | AT3G14740 | 38.596 | 6.79e-27 | 111 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SET | Tsu04g00393 | zf-HC5HC2H_2 | 4.5e-33 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g00393 | - | - | gmx:100806736 | 1761.89 |