Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00391 ATGACCATGGTTCCTTCTCAAAGcaacaaacaaaattacaaaactatTAATGGTGATTATGTTTTCTACAACAACAATACATCAACTAGTGCTATGAACCAATTTCAATttgttgaagactacaacaactACAATAATTGTTTAAGATCTGAATTTTTGGTGAGGCACAtggctgaagaagaagaatcatcATCAAGACTCAACACTATAACCACTACTCATCACAACGAATCTGAACCCGAACCCGAACAAGAAACTATTTCTACttcaaaggaagaagaagaacaagaacaagaaagaGAAGCAAATAATAAGAATACCAACAATAATAATTGGCTTCAGCTAAGCATAGGTAATACGGTCGTGTCAGCAACCACAAAACACGACCGTGATCATAACCAGGCTCCAACAAGCAGTTCAGGCTTATTAGAGCTTGAGTTATTGCCAACAAATTGGACTTCTTCACGGCCTAATTTAGAGCAACCATCGACCAGAGGTTGCTCAACTTTTaattcttctttgtttttagaACAAACTACATCCTCCTCTTCTTCGTCATCCATGTCCATATCTATGTCCATGCCGAGTGGGCCAACATATggtcatcaacaacaacaacaacaacatcaacatctaGTACCACATAACTGGGCATTTGGTCCATTACATCTACCACATTCTATGGCAATTATGCATTCTTCAACATCTTATATTCCCTCTTTATCTTCTTCGTCGCAATCTTGTTCTTCTTTAAGGCCTTCTTTAGGACCTAATTATTATCCTCAATATCATCATGCATCAcccttttattttccttcatcatcttcatcttcttctggATTTGATCAATTTGATGTGGCTGGACCTAGCTCATCATCTCATATCGCTTTTCGCGTAGTTGATCCTCCTCGTAGACCTCATTCTGGAATTTGGTTTATGCTACAAGCTTCACAAAACCAAGTGAAAGAACCATGCTTGCCACAAATACCTAAGAACTATCTTAGAATCAAAGATGGAAGAATGACAGTTCGGTTGCTGTTGAAGTATTTGGTTAGTAAACTCAAACTGGAGAGCGAATCAGAGATAGAGATAACATGCAGAGGCCAACAACTTTTACCTTTCTTAACGTTGCAGCATGTGAGGGATAATATTTGGACACCAAGGGACACTACAACAAGGCCTTTGCTTTCAGATTCCTCAACATCAGATCATGTTATGGTGCTTCATTATGGTAGAAGCACTTCTTGA 1248 0.3317 MTMVPSQSNKQNYKTINGDYVFYNNNTSTSAMNQFQFVEDYNNYNNCLRSEFLVRHMAEEEESSSRLNTITTTHHNESEPEPEQETISTSKEEEEQEQEREANNKNTNNNNWLQLSIGNTVVSATTKHDRDHNQAPTSSSGLLELELLPTNWTSSRPNLEQPSTRGCSTFNSSLFLEQTTSSSSSSSMSISMSMPSGPTYGHQQQQQQHQHLVPHNWAFGPLHLPHSMAIMHSSTSYIPSLSSSSQSCSSLRPSLGPNYYPQYHHASPFYFPSSSSSSSGFDQFDVAGPSSSSHIAFRVVDPPRRPHSGIWFMLQASQNQVKEPCLPQIPKNYLRIKDGRMTVRLLLKYLVSKLKLESESEIEITCRGQQLLPFLTLQHVRDNIWTPRDTTTRPLLSDSSTSDHVMVLHYGRSTS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00391 415 MobiDBLite consensus disorder prediction 76 102 - -
Tsu04g00391 415 MobiDBLite consensus disorder prediction 181 202 - -
Tsu04g00391 415 Coils Coil 90 111 - -
Tsu04g00391 415 PANTHER RING FINGER PROTEIN 1 413 IPR044171 GO:0007275
Tsu04g00391 415 Gene3D - 304 410 - -
Tsu04g00391 415 PANTHER RING FINGER PROTEIN 1 413 - -
Tsu04g00391 415 MobiDBLite consensus disorder prediction 60 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00391 Tsu-Chr4 3661329 3674596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00391 326 410 C3H Transcription Factor Family AT3G23060 39.326 2.24e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00391 - - mtr:MTR_7g021270 531.176