Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00383 ATGGTTGCCGCCAAGAAGACCAAGAAGACTCATGAGAGCATCAACAACAGGCTCGCTCTTGTTATGAAGAGTGGCAAATATACCCTCGGTTATAAAACCGTTCTCAAATCCCTAAGGAGTTCCAAAgGGAAATTGATTATTATTGCTAACAACTGTCCTCCTTTGAGGAAATCTGAAATTGAGTACTATGCTATGTTAGCAAAGGTTGGAGTTCACCATTACAATGGAAacAATGTTGACTTGGGCACTGCATGTGGAAAATACTACAGAGTTTGCTGCCTCAGCATTATCGATCCTGGTGATTCTGACATCATTAAGTCAATTCCTGGGGAGCAGTAA 339 0.41 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGEQ 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00383 112 Hamap 50S ribosomal protein L30e [rpl30e]. 12 109 IPR000231 GO:0003723|GO:0003735|GO:0022625
Tsu04g00383 112 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 13 105 IPR004038 -
Tsu04g00383 112 PANTHER RIBOSOMAL PROTEIN L30 1 112 IPR039109 GO:0003723
Tsu04g00383 112 Gene3D - 2 108 IPR029064 -
Tsu04g00383 112 ProSitePatterns Ribosomal protein L30e signature 2. 80 100 IPR022991 -
Tsu04g00383 112 PANTHER 60S RIBOSOMAL PROTEIN L30 1 112 - -
Tsu04g00383 112 SUPERFAMILY L30e-like 13 106 IPR029064 -
Tsu04g00383 112 ProSitePatterns Ribosomal protein L30e signature 1. 24 48 IPR022991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00383 Tsu-Chr4 3597519 3599328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00383 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 87.500 5.56e-72 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00383 K02908 - gmx:100806260 227.639