Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00382 ATGGTAGATAACGAGTTTGATGCTTATTATGCATCAAATTCTAATTGGTGTTCAGACCCTGATTTGTCTACTATGGTTTCTGCTCTCTCTCAAGTCATTGGAACATCTAACAATAATCATAATCCTCACATGGCACAATCAACATCAACTACCATGGTTAATGAAGAATCTCAACCATCTCAAGTACCTCTTCTAGATCAAGAGACTCCAAAGAAACCGCACTATAGAGGAGTAAGACAAAGACCATGGGGAAAATGGGCAGCTGAAATACGTGACCCAAAAAAAGCAGCTAGAGTTTGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCTATTGCATATGACAAAGCAGCACTTAAATTCAAAGGCACAAAAGCTAAACTTAATTTCCCTGAAagagttcttcaacatcaatccaacaacaacaataattcTAGTTCCATTCATCAACAAAGTGGTTCTGTTGATCAACAAGTTTTTCCAAACCTTTTTCAATATGCTCAGATTCTTTCTAGTGATGCTGAATTTCCTTATTATGCTTCTCATCTTttcaatcaacaacaacaacaaggagATCGTCATCTGCCCGGCCAGTAG 597 0.3417 MVDNEFDAYYASNSNWCSDPDLSTMVSALSQVIGTSNNNHNPHMAQSTSTTMVNEESQPSQVPLLDQETPKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAIAYDKAALKFKGTKAKLNFPERVLQHQSNNNNNSSSIHQQSGSVDQQVFPNLFQYAQILSSDAEFPYYASHLFNQQQQQGDRHLPGQ 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00382 198 Gene3D AP2/ERF domain 74 133 IPR036955 GO:0003700|GO:0006355
Tsu04g00382 198 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Tsu04g00382 198 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Tsu04g00382 198 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Tsu04g00382 198 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Tsu04g00382 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 32 186 - -
Tsu04g00382 198 PANTHER DNA-BINDING DOMAIN 32 186 IPR044808 GO:0003700|GO:0009873
Tsu04g00382 198 MobiDBLite consensus disorder prediction 36 65 - -
Tsu04g00382 198 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Tsu04g00382 198 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Tsu04g00382 198 CDD AP2 73 132 IPR001471 GO:0003700|GO:0006355
Tsu04g00382 198 MobiDBLite consensus disorder prediction 36 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00382 Tsu-Chr4 3591610 3593757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00382 25 184 AP2-EREBP Transcription Factor Family AT5G13330 51.124 1.63e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g00382 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00382 - - mtr:MTR_7g020980 270.781