Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00381 ATGCCTTGTGAAACAATGgatttcaataatttttcttcttcgtCGATGTTTTCCTCGGACGATATTCGTTCTTCTACTGAGCAGAGAGAAACTGGATGGTGGAAATTCGGTAAAATTTCGAAAGACCATGATTCTGATCAAGGAACAAAACCTATGCAAGCAGTTTCCAAATTTTCAGATGGTAATGAAGTTAATATAATCGCGGCTCCGTGTGAAAGTAGCCTCTTCTCGAGTTCTTTGTCTGATTTGTTTAGCAGAAAATTGCGATTATCTACGGATAATGCTTTATATGGACGTTCAGTGGATACAAATGCATCAGAGAAGCTTGATGACTCTCTTGAAGAACTTGAGGCTCAAATTATTGGAAACCTACTTCCGAACGAGGATGATTTACTTTCTGGAGTGACTGACTGGAACGACCATATTGTTCGAGATAGCACCGGTGATGACATAGATGAACTAGACTTTTTCAGTAGTGTTGGAGGTCTGGAACTTGAAGATGTTGATAATTCATCCTCTGGAGAAAAGAATTCCAAAATCATCGGTCGAGCTCAGCACAATCAACTAGGACTGTGTAATACCTCGATCGCCGAAGAAAACTCTTTTGGTGAACATTCTTCTAGAACattatttgtgaaaaatattgATAGTGATGTTAAAGATTCTGTGCTTAAAGCACTTTTTGAGCAATTTGGAGATATTCACACTTTTTATAGAGCTTGCAAACATCAAGGACTTGCTATGATATCATATTATGATATCAGAGCTTCTCAAAATGCAATGAAAGCACTCCATAATAGACTCTTCGGTCgcaagaaatttgaaattcattATTCGATTCCAAAGGATAGTCCTTCCAAAAAAGTTGTGAATCAGGGAACACTTGAagtattattatatgatttatcAATTTCAAATGCTGAACTTCACCAAATATTTACTGTTTATGGAGAAATCAAAGAGATTCATGAAAACCCTTACAGTCGGCGTCACAAGTTGATCGAACTTTACGATTTTAGAGTTGCAAATGCAGCTCTCCATGGTATAAATAGAAATGATACTATCATGAAGAGGTTAAAGGTTGATCCAAGCCAATCTACAAACTCCGAAAGCAAGGTGATTCAACAGATTCATCCCGAATTCAAACAAGAATGCAACCTATGTCTTCATCAGAAGAGTCCTCTAACAACTAGCTTCCAAGGCTTGCATGGTATCTCTTCGAGTGTTCCGAACATGTTACCGTCTGTAATCAACGTTAAATCAGTTGGAAACCAATGTGAATTTACCGAATCTAGTTCACCGTTGCAGTTGAATTTGGATACTCAAACTGCATTAGCTTTTCATCCTCATTCCCTACCGGAACGTCGTCATGGTTTTACTAACGATGTTCACCGCAATCCTCTTGAGGTGGCTGCAAACATTAATCTcaaaacacaagaaagaatcGATAACATGCAGTTTTGTCAAGTAAAGTCCAATGGACCCTTTATGGATTTTGATGAATGTGTTTCAAATTCCTCTGGTAATATAAGCTCAAGCTTCCCTCTTTCTGGCCATCATGACAAATGGAGCAACTCCTATCCGCCTCCTCGAACAATGTGGCCGAACTCACCATTCTGTGGAACTTGTGCAGTACCTACTCTGCAAAGTATGAACCAACTTCCTATGTCACCATCACATATGATAACCACTGTTTTACCAACAAATAACCATCATGTGCAATCACCTCCTCTTTGGGACGGAAGATATACCTATGTAGGGGAATCCGTACCTCCACATTGTGTTGACTTTGTTCCACATAACATGCTCCCTCATTTTGGACTCAACTTCCATAACCAAAGGGGCATGATGTTTCCTGGTAGAAACCATATGATTAACAACTCTTTTGATGCTTACAAACGCGTAAGAAGTCGTAGAAATGTAGGCACATCGAACTTGGCTGACTTGAAACGGTATGAACTTGACATTGACTGCATAACGAGGGGCGAAGATAACCGAACAACACTTATGATAAAGAACATACCTAACAAGTATACTTCCAAGATGCTGTTGGCCACAATCGATGAACGCCATAAAGGAACTTATGATTTTGTGTATCTACCAATTGATTTCAGAAATAAATGCAATGTTGGATATGCATTCATCAACATGACTAGTCCTAGCTCGATTGTACCGTTCTATCAGGTGTTCAATGGAAAAAAGTGGGAGTTTTTCAACAGTGAGAAAGTGGCATCACTCGCATATGCTCGCATACAAGGGAAAGCTGCTCTTATTGCTCACTTCCAAAACTCAAGCTTGATGAATGTGGATAAGCGTTGCAGGCCTATCCTCATCGACACTGATGGCCCTAATGCCGGTGATCAGGTCCCTTTCCCGATTGCCGTAAAACCTGGAAGAGTGAGAAGTAACATTCATGAGGAAGACAATGTTTCAAAGGAATCAGACTAA 2448 0.3848 MPCETMDFNNFSSSSMFSSDDIRSSTEQRETGWWKFGKISKDHDSDQGTKPMQAVSKFSDGNEVNIIAAPCESSLFSSSLSDLFSRKLRLSTDNALYGRSVDTNASEKLDDSLEELEAQIIGNLLPNEDDLLSGVTDWNDHIVRDSTGDDIDELDFFSSVGGLELEDVDNSSSGEKNSKIIGRAQHNQLGLCNTSIAEENSFGEHSSRTLFVKNIDSDVKDSVLKALFEQFGDIHTFYRACKHQGLAMISYYDIRASQNAMKALHNRLFGRKKFEIHYSIPKDSPSKKVVNQGTLEVLLYDLSISNAELHQIFTVYGEIKEIHENPYSRRHKLIELYDFRVANAALHGINRNDTIMKRLKVDPSQSTNSESKVIQQIHPEFKQECNLCLHQKSPLTTSFQGLHGISSSVPNMLPSVINVKSVGNQCEFTESSSPLQLNLDTQTALAFHPHSLPERRHGFTNDVHRNPLEVAANINLKTQERIDNMQFCQVKSNGPFMDFDECVSNSSGNISSSFPLSGHHDKWSNSYPPPRTMWPNSPFCGTCAVPTLQSMNQLPMSPSHMITTVLPTNNHHVQSPPLWDGRYTYVGESVPPHCVDFVPHNMLPHFGLNFHNQRGMMFPGRNHMINNSFDAYKRVRSRRNVGTSNLADLKRYELDIDCITRGEDNRTTLMIKNIPNKYTSKMLLATIDERHKGTYDFVYLPIDFRNKCNVGYAFINMTSPSSIVPFYQVFNGKKWEFFNSEKVASLAYARIQGKAALIAHFQNSSLMNVDKRCRPILIDTDGPNAGDQVPFPIAVKPGRVRSNIHEEDNVSKESD 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00381 815 SUPERFAMILY RNA-binding domain, RBD 668 752 IPR035979 GO:0003676
Tsu04g00381 815 Pfam RNA recognition motif 2 666 762 IPR007201 -
Tsu04g00381 815 Gene3D - 198 295 IPR012677 -
Tsu04g00381 815 SUPERFAMILY RNA-binding domain, RBD 206 367 IPR035979 GO:0003676
Tsu04g00381 815 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 281 IPR000504 GO:0003723
Tsu04g00381 815 PANTHER RNA RECOGNITION MOTIF-CONTAINING 45 813 - -
Tsu04g00381 815 Gene3D - 296 382 IPR012677 -
Tsu04g00381 815 CDD RRM1_MEI2_like 207 283 IPR034453 -
Tsu04g00381 815 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 273 IPR000504 GO:0003723
Tsu04g00381 815 PANTHER PROTEIN MEI2-LIKE 4 45 813 - -
Tsu04g00381 815 CDD RRM3_MEI2_like 669 754 IPR034454 -
Tsu04g00381 815 SMART rrm1_1 668 744 IPR000504 GO:0003723
Tsu04g00381 815 SMART rrm1_1 209 277 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00381 Tsu-Chr4 3573525 3577605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00381 210 322 Eukaryotic Initiation Factors Gene Family AT3G16380 27.049 3.70e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00381 - - mtr:MTR_7g020950 1220.68