Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00379 ATGGCTTTGGACCAACCTTCGTTACCTTCGAATACCAATTCCGTCGACGGTGAATCCGTTAACGGAACGCCACCGTCTTCCGCCGTCAATGGCGGCGAAGATGGAAAACCAACGGCGAGACTACCACGATGGACTAGGCAAGAGATTTTGGTGCTTATTCAAGGTAAGAGTGATGCTGAAAGCCGGTTCAAACCGGGTCGAAACGGTTCAGGATTTGGTTCGAGTGAACCGAAGTGGGCGTTGGTTTCTTCTTACTGTAAGAAACACGGTGTGAACCGTGGACCGATTCAGTGTCGGAAACGGTGGAGTAATCTCGCCGGAGATTATAAGAAGATTAAGGAGTGGGAATCTCAGGTGAAAGATGAAACGGAGTCGTTTTGGTTGATGAGGAATGATTTGAGAAGAGAGAGGAAATTGCCTGGTTATTTTGATCGTGAGGTTTATGATATTCTTGATTCACCTTCTATGGCTGCTGCTGCTGCAGCGGCTGCAACTGCAACTGTTGTTGTTCCGGTGGCGGTATCGGAGCCTGTTGGTGATGAAGAGATTCATATTTATGATAGTAATAGGAAAGTGAGTGGTGAAGATGGTTTATTCTCTGATTTTGAAAAGGATGAAGTTTTGGTTCCTTCCAAAGATGTTCATGTTCCTTCACCTGTTCCTATCTCAGAGAAGCAGTTTCTACCACTCCTCCGTGCCTGTGATGGAGAAGGCAATGCTCAAGGTACCAAAAATGAGAAACAACCAGCTTCACATCCAGAAATGGGTTCTACATCTCAAGGGGAACGGAAGAGGAAACGGTTTGCAACTGATGGAGATGAAGAAGAGGAAACTCTACAGAGTCAATTAATTGATGTGTTAGAGAAGAATGGTAAGATGCTAAGTGAACAACTAGAGGCTCAGAACATCAATTTCCAGCTAGATCGCCAGCACCAGAATGACACTGCAAGTAGCATTGTTGCTGTGCTTGATAAGCTTGCAAATGCTCTTGGGAGAATTGCTGATAAATTGTAG 1014 0.4517 MALDQPSLPSNTNSVDGESVNGTPPSSAVNGGEDGKPTARLPRWTRQEILVLIQGKSDAESRFKPGRNGSGFGSSEPKWALVSSYCKKHGVNRGPIQCRKRWSNLAGDYKKIKEWESQVKDETESFWLMRNDLRRERKLPGYFDREVYDILDSPSMAAAAAAAATATVVVPVAVSEPVGDEEIHIYDSNRKVSGEDGLFSDFEKDEVLVPSKDVHVPSPVPISEKQFLPLLRACDGEGNAQGTKNEKQPASHPEMGSTSQGERKRKRFATDGDEEEETLQSQLIDVLEKNGKMLSEQLEAQNINFQLDRQHQNDTASSIVAVLDKLANALGRIADKL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00379 337 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 1 337 - -
Tsu04g00379 337 MobiDBLite consensus disorder prediction 241 257 - -
Tsu04g00379 337 ProSiteProfiles Myb-like domain profile. 36 106 IPR001005 -
Tsu04g00379 337 CDD GT1 42 113 - -
Tsu04g00379 337 Coils Coil 323 337 - -
Tsu04g00379 337 Gene3D - 44 111 - -
Tsu04g00379 337 MobiDBLite consensus disorder prediction 235 278 - -
Tsu04g00379 337 MobiDBLite consensus disorder prediction 258 274 - -
Tsu04g00379 337 MobiDBLite consensus disorder prediction 1 43 - -
Tsu04g00379 337 Pfam Myb/SANT-like DNA-binding domain 43 129 IPR044822 -
Tsu04g00379 337 MobiDBLite consensus disorder prediction 1 28 - -
Tsu04g00379 337 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00379 Tsu-Chr4 3559095 3562942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00379 43 114 Trihelix Transcription Factor Family AT1G33240 34.667 8.78e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu04g00379 Myb_DNA-bind_4 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00379 - - cam:101510442 577.785