Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00372 ATGGGAAAGAAAAAGACAGATGATGCAGGTCCATCTACAAAAGCTAAGGCTGGTAGCAAAGATCCTTCTAAGAAGGAAAAATTGTCAGTCTCTGCCATGTTGGCAGGTATGGATGACAAACCCGAAAAGCCTAAAAAAGGATCTTCTACGAATAAGCCGAAGCCAAAAGCTGCTCCGAAAGCTTCTGCGTACACCGATGATATAGATCTTCCTCCTTCCGATGATGATGAGTCAGAAGAGGAGCTAGAGGAAAAGCATAGACCTGATGTGAAGCCACTTGAGGTGTCTATTGCTGAAAAAGAGTTGAAAAAGCGTGAAAAGAAAGATATTTTAGCTGCCTATGTGGCTGAACAGGCAAAGAAAGAAGCTCTTAAGGATGATCGTGATGCTTTCACTGTTGTCATTGGAAGTCGGGCTTCTGTGCTTGATGGAGACGATGGTGCTGATGCTAATGTTAAAGATATAACGATAGAAAATTTTTCTGTATCTGCTCGAGGTAAAGAACTTCTGAAGAATGCATCAGTGAAGATATCTCATGGCAAGCGGTATGGTTTGGTTGGGCCGAATGGAATGGGAAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGATAGTTGGTGATGATAAAACAGCACTTGAAGCCGTTGTTTCGGCTAATACTGAACTTGTTAAAGTTAGACAAGAAGTTGCTGATCTACAGAATGTAGCTTCTGGCGAAGGTGTGGATAAAGATGCTACTAATTTGGAAGAGGATGCAGGAGAAAAGCTAGCAGAGCTGTATGAACAATTACAGCTGATGGGGTCTGATGCTGCTGAATCTCAAGCGTCAAAAATTTTAGCTGGTCTGGGTTTTACAAAGGATATGCAGGTCCGTCCTACCAAATCCTTTAGTGGCGGTTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCCACTCTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGTCGTTGGAAGAAAACCTTGGTCGTTGTTTCACATGATAGAGATTTTCTCAATACAGTATGCTCTGAGATTATTCACTTGCATGATTGGAAACTTCATTTCTATCGTGGAAATTTTGATGCTTTTGAGACCGGATATGAACAGCGTCGTAGAGAGGCGAATAAGAAGTATGAGACTTATGACAAGCAATTGAGAGCGGCTAAAAGGACTGGAAACAAGGCTCAACAAGATAAGGTGAAGGATCGAGCCAAGTTTGCAGCAGCTAAGGAAGcatcaaaaaacaaaagtaaggGTAAGGTTGATGAGGATGAGGCCCAAGTAGAGGTACCACACAAGTGGAAGGACTACAGCGTAGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCACCACTTCTGCAGCTTATTGAGGTGAGCTTCAGCTACCCAAACCGAGAGGATTTCAGACTCTCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATCGTTGGGCCCAATGGAGCTGGAAAATCTACGCTGCTAAATCTTCTAGCTGGTGATTTGGTTCCAAGTGAAGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGGAGATACTCCCAACACTTTGTGGACCTGCTAACAATGGACGAAACACCTGTTCAGTACCTTCTTCGTCTCCATCCAGACCAGGAGGGGCTTAGTAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAATTTGGGCTACCTAGTCATAACCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAAGCTCGTGTGGTGTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCTAATGCGCTTGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCACGATTCTAGATTGATATCTCGTGTctgtgatgatgaagaaaggaGTCAAATATGGATTGTTGAGGACGGCACTGTCAGAAATTTCCCTGGAACATTTGAAGATTACAAGGACGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTGA 2145 0.4266 MGKKKTDDAGPSTKAKAGSKDPSKKEKLSVSAMLAGMDDKPEKPKKGSSTNKPKPKAAPKASAYTDDIDLPPSDDDESEEELEEKHRPDVKPLEVSIAEKELKKREKKDILAAYVAEQAKKEALKDDRDAFTVVIGSRASVLDGDDGADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEIVGDDKTALEAVVSANTELVKVRQEVADLQNVASGEGVDKDATNLEEDAGEKLAELYEQLQLMGSDAAESQASKILAGLGFTKDMQVRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDWKLHFYRGNFDAFETGYEQRRREANKKYETYDKQLRAAKRTGNKAQQDKVKDRAKFAAAKEASKNKSKGKVDEDEAQVEVPHKWKDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALANALDEFTGGVVLVSHDSRLISRVCDDEERSQIWIVEDGTVRNFPGTFEDYKDDLLKEIKAEVDD 714
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00372 714 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 4 714 - -
Tsu04g00372 714 Pfam ABC transporter 170 340 IPR003439 GO:0005524
Tsu04g00372 714 MobiDBLite consensus disorder prediction 1 89 - -
Tsu04g00372 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 487 712 IPR003439 GO:0005524
Tsu04g00372 714 Gene3D - 449 713 IPR027417 -
Tsu04g00372 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 389 IPR027417 -
Tsu04g00372 714 Coils Coil 231 251 - -
Tsu04g00372 714 Gene3D - 152 435 IPR027417 -
Tsu04g00372 714 PANTHER - 4 714 - -
Tsu04g00372 714 Pfam ABC transporter 504 639 IPR003439 GO:0005524
Tsu04g00372 714 ProSitePatterns ABC transporters family signature. 312 326 IPR017871 GO:0005524
Tsu04g00372 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 155 408 IPR003439 GO:0005524
Tsu04g00372 714 MobiDBLite consensus disorder prediction 421 458 - -
Tsu04g00372 714 Coils Coil 404 424 - -
Tsu04g00372 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 699 IPR027417 -
Tsu04g00372 714 SMART AAA_5 179 394 IPR003593 -
Tsu04g00372 714 SMART AAA_5 513 689 IPR003593 -
Tsu04g00372 714 CDD ABCF_EF-3 155 383 - -
Tsu04g00372 714 CDD ABCF_EF-3 487 689 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu04g00372 Tsu-Chr4 3506780 3512715 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00372 487 690 Calmodulin-binding Proteins AT2G36910 28.700 7.17e-12 67.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00372 K06184 - gmx:100806865 1168.68