Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g00372 | ATGGGAAAGAAAAAGACAGATGATGCAGGTCCATCTACAAAAGCTAAGGCTGGTAGCAAAGATCCTTCTAAGAAGGAAAAATTGTCAGTCTCTGCCATGTTGGCAGGTATGGATGACAAACCCGAAAAGCCTAAAAAAGGATCTTCTACGAATAAGCCGAAGCCAAAAGCTGCTCCGAAAGCTTCTGCGTACACCGATGATATAGATCTTCCTCCTTCCGATGATGATGAGTCAGAAGAGGAGCTAGAGGAAAAGCATAGACCTGATGTGAAGCCACTTGAGGTGTCTATTGCTGAAAAAGAGTTGAAAAAGCGTGAAAAGAAAGATATTTTAGCTGCCTATGTGGCTGAACAGGCAAAGAAAGAAGCTCTTAAGGATGATCGTGATGCTTTCACTGTTGTCATTGGAAGTCGGGCTTCTGTGCTTGATGGAGACGATGGTGCTGATGCTAATGTTAAAGATATAACGATAGAAAATTTTTCTGTATCTGCTCGAGGTAAAGAACTTCTGAAGAATGCATCAGTGAAGATATCTCATGGCAAGCGGTATGGTTTGGTTGGGCCGAATGGAATGGGAAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGATAGTTGGTGATGATAAAACAGCACTTGAAGCCGTTGTTTCGGCTAATACTGAACTTGTTAAAGTTAGACAAGAAGTTGCTGATCTACAGAATGTAGCTTCTGGCGAAGGTGTGGATAAAGATGCTACTAATTTGGAAGAGGATGCAGGAGAAAAGCTAGCAGAGCTGTATGAACAATTACAGCTGATGGGGTCTGATGCTGCTGAATCTCAAGCGTCAAAAATTTTAGCTGGTCTGGGTTTTACAAAGGATATGCAGGTCCGTCCTACCAAATCCTTTAGTGGCGGTTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCCACTCTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACTTGTGTCGTTGGAAGAAAACCTTGGTCGTTGTTTCACATGATAGAGATTTTCTCAATACAGTATGCTCTGAGATTATTCACTTGCATGATTGGAAACTTCATTTCTATCGTGGAAATTTTGATGCTTTTGAGACCGGATATGAACAGCGTCGTAGAGAGGCGAATAAGAAGTATGAGACTTATGACAAGCAATTGAGAGCGGCTAAAAGGACTGGAAACAAGGCTCAACAAGATAAGGTGAAGGATCGAGCCAAGTTTGCAGCAGCTAAGGAAGcatcaaaaaacaaaagtaaggGTAAGGTTGATGAGGATGAGGCCCAAGTAGAGGTACCACACAAGTGGAAGGACTACAGCGTAGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCACCACTTCTGCAGCTTATTGAGGTGAGCTTCAGCTACCCAAACCGAGAGGATTTCAGACTCTCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATCGTTGGGCCCAATGGAGCTGGAAAATCTACGCTGCTAAATCTTCTAGCTGGTGATTTGGTTCCAAGTGAAGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGGAGATACTCCCAACACTTTGTGGACCTGCTAACAATGGACGAAACACCTGTTCAGTACCTTCTTCGTCTCCATCCAGACCAGGAGGGGCTTAGTAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAATTTGGGCTACCTAGTCATAACCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAAGCTCGTGTGGTGTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCTAATGCGCTTGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCACGATTCTAGATTGATATCTCGTGTctgtgatgatgaagaaaggaGTCAAATATGGATTGTTGAGGACGGCACTGTCAGAAATTTCCCTGGAACATTTGAAGATTACAAGGACGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTGA | 2145 | 0.4266 | MGKKKTDDAGPSTKAKAGSKDPSKKEKLSVSAMLAGMDDKPEKPKKGSSTNKPKPKAAPKASAYTDDIDLPPSDDDESEEELEEKHRPDVKPLEVSIAEKELKKREKKDILAAYVAEQAKKEALKDDRDAFTVVIGSRASVLDGDDGADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEIVGDDKTALEAVVSANTELVKVRQEVADLQNVASGEGVDKDATNLEEDAGEKLAELYEQLQLMGSDAAESQASKILAGLGFTKDMQVRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDWKLHFYRGNFDAFETGYEQRRREANKKYETYDKQLRAAKRTGNKAQQDKVKDRAKFAAAKEASKNKSKGKVDEDEAQVEVPHKWKDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALANALDEFTGGVVLVSHDSRLISRVCDDEERSQIWIVEDGTVRNFPGTFEDYKDDLLKEIKAEVDD | 714 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g00372 | 714 | PANTHER | ATP-BINDING TRANSPORT PROTEIN-RELATED | 4 | 714 | - | - | |
Tsu04g00372 | 714 | Pfam | ABC transporter | 170 | 340 | IPR003439 | GO:0005524 | |
Tsu04g00372 | 714 | MobiDBLite | consensus disorder prediction | 1 | 89 | - | - | |
Tsu04g00372 | 714 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 487 | 712 | IPR003439 | GO:0005524 | |
Tsu04g00372 | 714 | Gene3D | - | 449 | 713 | IPR027417 | - | |
Tsu04g00372 | 714 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 155 | 389 | IPR027417 | - | |
Tsu04g00372 | 714 | Coils | Coil | 231 | 251 | - | - | |
Tsu04g00372 | 714 | Gene3D | - | 152 | 435 | IPR027417 | - | |
Tsu04g00372 | 714 | PANTHER | - | 4 | 714 | - | - | |
Tsu04g00372 | 714 | Pfam | ABC transporter | 504 | 639 | IPR003439 | GO:0005524 | |
Tsu04g00372 | 714 | ProSitePatterns | ABC transporters family signature. | 312 | 326 | IPR017871 | GO:0005524 | |
Tsu04g00372 | 714 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 155 | 408 | IPR003439 | GO:0005524 | |
Tsu04g00372 | 714 | MobiDBLite | consensus disorder prediction | 421 | 458 | - | - | |
Tsu04g00372 | 714 | Coils | Coil | 404 | 424 | - | - | |
Tsu04g00372 | 714 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 465 | 699 | IPR027417 | - | |
Tsu04g00372 | 714 | SMART | AAA_5 | 179 | 394 | IPR003593 | - | |
Tsu04g00372 | 714 | SMART | AAA_5 | 513 | 689 | IPR003593 | - | |
Tsu04g00372 | 714 | CDD | ABCF_EF-3 | 155 | 383 | - | - | |
Tsu04g00372 | 714 | CDD | ABCF_EF-3 | 487 | 689 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g00372 | Tsu-Chr4 | 3506780 | 3512715 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g00372 | 487 | 690 | Calmodulin-binding Proteins | AT2G36910 | 28.700 | 7.17e-12 | 67.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g00372 | K06184 | - | gmx:100806865 | 1168.68 |