Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00338 ATGATTATACCAAGAGAAAAAACTCTTCtttattttgcatttttcttgttttggaCTAGTTTTAAATGTTCAAATGCTTTGCTTTCTTCTAAAGGAGTAAACTTTGAAGTGCAAGCTTTAATGGGTATAAAAGAGTCTTTAGTAGATCCTCATGGTGTTCTTGATAATTGGGATGGTGATGCTGTTGATCCATGTAGTTGGACTATGGTTACATGTTCTACTGAAAATCTTGTCAATGGATTGGGCATTCCTAGTCAAAGTTTATCAGGTACTTTATCTCCAAGCATAGGGAATTTAACCAACCTTCATATTGTGTTGCTACAGAATAACAACATAACTGGATCAATCCCTTCAGAATTAGGAAAACTCCCTAAGCTTCAAACTCTTGATCTTTCTAATAATTTCTTCGGTGATGAAATTCCTCCTTCTCTTGGTCAGTTAAGAAGCCTTCAATACTTgaGGCTCAATAATAATAGTCTTGCTGGTGAATGTCCAGAATCACTTGCTAACATGACACAATTAGCTTTTCTTGATTTGTCCTACAACAATCTTAGTGGACCAGTCCCAAGAATTTTGGCCAAGTCATTCAGcATTGTTGGTAACCCTCTTGTTTGTGCCACTGGAAATGAACCAAATTGTCATGGGATGACATTGATGCCAATTTCCATGAACTTAAACAATACTCAAGATGCTTTACCATCAAGCAAACCAAAAAGTCATAAAATGGCTATAGTCTTTGGTTTGAGTCTTGGATGTCTTTGCCTTATAGTTATTGGTTTTGGACTTGTTCTTTGGTGGAGACACAAGCATAATCAACAAGCATTCTTTGATGTCAAAGACCGACATCATGAAGAAGTTTACCTTGGAAACTTGAAGAGGTTTCCATTCAGAGAACTTCAGAATGCTACAAATAACTTCAGCAGCAAAAACTTAGTCGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAATTCTCTCGGATGGAACTGTTGTCGCTGTGAAGAGGCTCAAAGATGGCAATGCAGTTGGAGGAGAGATTCAATTTCAGACTGAAGTTGAAATGATTAGCTTAGCAGTACATAGAAATCTCCTTAGACTTTATGGATTTTGCATGACATCTAATGAAAGGCTTTTAGTTTATCCTTACATGTGTAATGGAAGTGTCGCATCTCGTTTGAAGGGTAAACCAGTGTTGGATTGGGGAACAAGGAAGAACATTGCTTTAGGAGCAGCAAGAGGACTACTATACCTTCATGAGCAATGTGATCCAAAGATAATTCATAGAGATGTAAAAGCTGCAAACATATTGCTTGATAACTATTGTGAAGCTGTTGTTGGAGATTTTGGTTTGGCAAAGCTTTTGGATCATCAAGATTCACATGTCACAACTGCAGTGAGAGGAACTGTAGGACATATTGCACCAGAATATCTTTCCACAGGACAATCCTCTGAGAAAACTGATGTGTTTGGATTTGGTATTCTTCTTCTTGAGTTAATCACTGGTCAGAGAGCCTTGGAGTTTGGAAAAGCTGCTAACCAAAAAGGAGCTATGCTTGATTGGGTAACTAATGCTTCTTTTTTACTCTTTATtgttcattaa 1599 0.3665 MIIPREKTLLYFAFFLFWTSFKCSNALLSSKGVNFEVQALMGIKESLVDPHGVLDNWDGDAVDPCSWTMVTCSTENLVNGLGIPSQSLSGTLSPSIGNLTNLHIVLLQNNNITGSIPSELGKLPKLQTLDLSNNFFGDEIPPSLGQLRSLQYLRLNNNSLAGECPESLANMTQLAFLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGNEPNCHGMTLMPISMNLNNTQDALPSSKPKSHKMAIVFGLSLGCLCLIVIGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFPFRELQNATNNFSSKNLVGKGGFGNVYKGILSDGTVVAVKRLKDGNAVGGEIQFQTEVEMISLAVHRNLLRLYGFCMTSNERLLVYPYMCNGSVASRLKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDNYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVTNASFLLFIVH 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00338 532 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Tsu04g00338 532 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 4 522 - -
Tsu04g00338 532 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Tsu04g00338 532 SUPERFAMILY Protein kinase-like (PK-like) 283 508 IPR011009 -
Tsu04g00338 532 SMART LRR_typ_2 147 170 IPR003591 -
Tsu04g00338 532 SMART LRR_typ_2 123 146 IPR003591 -
Tsu04g00338 532 SMART LRR_typ_2 99 122 IPR003591 -
Tsu04g00338 532 SMART LRR_typ_2 171 194 IPR003591 -
Tsu04g00338 532 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Tsu04g00338 532 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Tsu04g00338 532 SMART serkin_6 306 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00338 532 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 522 - -
Tsu04g00338 532 Pfam Protein kinase domain 307 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00338 532 ProSiteProfiles Protein kinase domain profile. 306 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00338 532 Gene3D Transferase(Phosphotransferase) domain 1 383 526 - -
Tsu04g00338 532 SUPERFAMILY L domain-like 35 206 - -
Tsu04g00338 532 Pfam Leucine Rich repeats (2 copies) 100 135 IPR025875 -
Tsu04g00338 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00338 Tsu-Chr4 3118337 3122867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00338 1 521 Receptor kinase-like Gene Family AT5G16000 77.672 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Tsu04g00338 Pkinase 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00338 - - gmx:100798412 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02348 06 29791753 29797023 Tsu04g00338 04 3118337 3122867 PCT