Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00337 ATGTTGGAGCACGAATTTCTCACCACTACCTCGGCCACCGGCAACGTTAGGTCTGCGGTCACGTGGCCACGTACATGTGACACCTGCCGCTCTGCTCCATGCGCGGTATTCTGCCGCGCAGACTCAGCGTATTTATGCGCTGGATGCGATTCACGCATCCACGCAGCAAACCGAGTAGCCTCAAGGCATGAGCGCGTTTGGGTCTGTGAAGCCTGCGAGCGTGCCCCGGCGGCTTTTCTTTGTAAAGCTGATGCTGCTTCTCTTTGCTCCTCTTGTGATGCCGATATCCACTCTGCTAACCCTCTTGCTAGCCGCCATCAACGTGTACCGATTCTTCCAATTTCCGGATACCTTTACGGTCCTCCAACGACCCTTTTAGGTGCCGATGATGAAGGCTTTGTTGGTGGTGGTTGCGGCGGTGGTGAGGTGGAGGAAGAGGAGGATGAAGGTAtggaagatgaagatgaagcagCTTCATGGCTTTTGTTGAATCCTCTAAAGAATAGCAATAACAAtagtaacaacaacaacaacagcatcaacaacaacaatagcaATGATCATAATCAAGAGGGTAATAATGGATTTTTGTTTAGTGGTGAGGTTGATGAGTATTTGGATCTTGTGGATTGTAATTCTTGTGGTGGTGGTGACAACACTTTCACTACCAATACTACTACTGCTACTACTCATCATGATGAGTATAGTCAACAACAAGATCATTATGGTGTTCCTCAAAAGAGCTATGTTGGGGATAGTGTTGTTCCTGTTCAACAACAGCAGGTACAAAATTTTCAACTTGGGTTGGAGTTTGAATCTTCCAAAGCTGGATTCAGTTACAATGGTGGTTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACAATGAGAGATGTCTCAATGAACTATTCAAGAACTTCAAAAGGAACAATTGACCTATTTTCAGGTCCTCCTATGCAAATGCCTTCTCATTTCTCACCAATGGACAGAGAAGCCAGAGTCCTAAGGtatagagagaaaaagaaaacaagaaaatttGAGAAGACAATTAGATATGCCTCAAGGAAAGCCTATGCAGAGACTCGACCGCGTATAAAAGGTCGATTCGCGAAGCGAACAGATGTAGATGCTGAAGTTGATCAAATGTTTTCCACATCACTAATTACAGAAGTTGGATATGGTATTGTTCCCTCATTCTAA 1224 0.4191 MLEHEFLTTTSATGNVRSAVTWPRTCDTCRSAPCAVFCRADSAYLCAGCDSRIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGYLYGPPTTLLGADDEGFVGGGCGGGEVEEEEDEGMEDEDEAASWLLLNPLKNSNNNSNNNNNSINNNNSNDHNQEGNNGFLFSGEVDEYLDLVDCNSCGGGDNTFTTNTTTATTHHDEYSQQQDHYGVPQKSYVGDSVVPVQQQQVQNFQLGLEFESSKAGFSYNGGSISQSVSVSSMDVGVVPESTMRDVSMNYSRTSKGTIDLFSGPPMQMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVDAEVDQMFSTSLITEVGYGIVPSF 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00337 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 407 IPR045281 GO:0009909
Tsu04g00337 407 MobiDBLite consensus disorder prediction 165 195 - -
Tsu04g00337 407 ProSiteProfiles CCT domain profile. 338 380 IPR010402 GO:0005515
Tsu04g00337 407 Pfam B-box zinc finger 66 111 IPR000315 GO:0008270
Tsu04g00337 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 21 407 - -
Tsu04g00337 407 Pfam CCT motif 338 380 IPR010402 GO:0005515
Tsu04g00337 407 ProSiteProfiles Zinc finger B-box type profile. 26 68 IPR000315 GO:0008270
Tsu04g00337 407 CDD Bbox1_BBX-like 26 68 - -
Tsu04g00337 407 SMART bboxneu5 21 68 IPR000315 GO:0008270
Tsu04g00337 407 SMART bboxneu5 69 111 IPR000315 GO:0008270
Tsu04g00337 407 CDD Bbox1_BBX-like 68 111 - -
Tsu04g00337 407 ProSiteProfiles Zinc finger B-box type profile. 64 111 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00337 Tsu-Chr4 3102659 3105647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00337 21 407 C2C2-CO-like Transcription Factor Family AT3G02380 54.523 1.05e-134 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tsu04g00337 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00337 - - zju:107405905 454.907