Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00313 atgGCTAGGTCTGCTAAAGGCAATCAAGATGAAGAATTGGTTGATGATGACGATCAAGACCTCTTCACTGCAAAcaattcttcttctctcaacAACAATGTGAAGGTCGATGAACCTAACAGAGGGAAAAGGGCTAACCCTCATCGTTCTAAGCATTCAGAAACTGAGCAGCGTAGAAGAAGCAAAATTAATGAAagATTTCAGGTTCTGAGAGATCTGATACCTGAAAATGATCAAAAAAGAGATAAAGCTTCTTTTTTGTTGGAGGTTATTGAATATATTCAGTTCCTAAAGGAAAAGTTACAAGTTTATGAACAGTCTTATGAAGGATGGAATCAGGAGCCAACTAAATTAATTCCATGGAGAAATCATCACGGACCTGCTGAAAATACTACAGAGGCTTGTCGAGCTATTCAAAATGGGTCTGTTCATGAAAAAAGTAACAATGTCTCTTCGTCATTGCCTAAAATCGTACAGAACCCAGTAGAGTCTGACCCCTCTATAACTATTCAGAAGGGTTGTACCCCTGGTTCATCTGCAGAAGCAGCTCCCCTGGCCATGCAAATGCGATTGGACATGTTCGATCCGGTTGTTAGCAGTTGTATGGTGACTCAACAGATGATGGAGTTGCCTGTATCTAATGCTGACATGGCTACCAATCTCCAACATCAAGTATGGCTTAGCAAACCAAACAAGGACGGCTATATTGTTCCAAATAACACATTGAAGGAACAAGAGGAGATGAAAATTGAAAGTGGATCAGAGTCAGATAGTGTCTCAAGTGCCTATTCTCAAAGAATATTGGGTACTCTCACCCAAGCGCTGCAATCTTCAGGTGTAGATTTGACCCAGGCCAGTGTCTCAGTGGATATTGATGTTGGTCGGCGAGCAAATACTGGGTTGACCCCCTGCCAATATAGCTTAAAGggTCATCATGAAAATCCATTTTTGAGCAATCAAGCAATGGCATGTTCAGGAATGGATTACTTCAGTGAGGATTCTGAACAGAGTCCAAAGAGGTTCAGACATGAATCAAGCTAG 1041 0.4035 MARSAKGNQDEELVDDDDQDLFTANNSSSLNNNVKVDEPNRGKRANPHRSKHSETEQRRRSKINERFQVLRDLIPENDQKRDKASFLLEVIEYIQFLKEKLQVYEQSYEGWNQEPTKLIPWRNHHGPAENTTEACRAIQNGSVHEKSNNVSSSLPKIVQNPVESDPSITIQKGCTPGSSAEAAPLAMQMRLDMFDPVVSSCMVTQQMMELPVSNADMATNLQHQVWLSKPNKDGYIVPNNTLKEQEEMKIESGSESDSVSSAYSQRILGTLTQALQSSGVDLTQASVSVDIDVGRRANTGLTPCQYSLKGHHENPFLSNQAMACSGMDYFSEDSEQSPKRFRHESS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00313 346 SMART finulus 53 103 IPR011598 GO:0046983
Tsu04g00313 346 Pfam Helix-loop-helix DNA-binding domain 49 97 IPR011598 GO:0046983
Tsu04g00313 346 MobiDBLite consensus disorder prediction 20 36 - -
Tsu04g00313 346 CDD bHLH_AtBIM_like 49 122 - -
Tsu04g00313 346 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 345 IPR044295 GO:0003700|GO:0006351|GO:0046983
Tsu04g00313 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 126 IPR036638 GO:0046983
Tsu04g00313 346 MobiDBLite consensus disorder prediction 1 63 - -
Tsu04g00313 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Tsu04g00313 346 MobiDBLite consensus disorder prediction 37 63 - -
Tsu04g00313 346 PANTHER TRANSCRIPTION FACTOR BIM3 1 345 - -
Tsu04g00313 346 Coils Coil 94 114 - -
Tsu04g00313 346 Gene3D - 45 118 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00313 Tsu-Chr4 2822909 2830896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00313 3 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 41.104 1.58e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g00313 HLH 8.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00313 - - mtr:MTR_7g017320 544.658