Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00302 ATGGGTTCTATTTGTTCTTGTTTGAgtgttgttgattttgaagaTTATGCGAATCCACATAGTCATGTATATAGGAACTGCGTGTGCGGCGGTTGCTTCGTACAAAACCTTTTGGCTGTTTATGCATCAATATTCCGGAGAGGGGAAATGCAGCCGCTTCCTTCATCTATACAGGGGGCAGCATCTATGACTTCTACCGCATCACTTGATAATTCTCTATCCGACATATACCGCTCTCCTCCAAGGCCGTTGCCTTATGATGTAGATCCTAGGCATTTCCGCTCACAGCACGACGGACTAGTTTCAAGACGTGAAAAGGGTTCCAGTCATTTGAATGAGGAGTCAGAACCTCTTAGGGGTGATTTGGATGTAGATTCAGAACCTATGAACTCGAGTGGTAAATGGAACGAATCCACTGGCAAAGATGGGTCAAAGGAATACCGTTCGAAGTCCACAGTAAGACTTTCGTCAGCAAAACCTACAACTGGAGCTGAGATTGTGTACGCATCATCAGAAGAAGAGGATGTTTGTCCAACTTGTCTTGAagAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGTTCTCATCATTATCATCTTGGTTGCATATACGAGTGGATGGAGAGAAGTGACACCTGTCCTGTTTGTGGGAAGgtgATGCTATTCGATGAAACGCTTTAA 684 0.424 MGSICSCLSVVDFEDYANPHSHVYRNCVCGGCFVQNLLAVYASIFRRGEMQPLPSSIQGAASMTSTASLDNSLSDIYRSPPRPLPYDVDPRHFRSQHDGLVSRREKGSSHLNEESEPLRGDLDVDSEPMNSSGKWNESTGKDGSKEYRSKSTVRLSSAKPTTGAEIVYASSEEEDVCPTCLEEYTEENPKIVTKCSHHYHLGCIYEWMERSDTCPVCGKVMLFDETL 227
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00302 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Tsu04g00302 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Tsu04g00302 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 226 IPR013083 -
Tsu04g00302 227 SUPERFAMILY RING/U-box 172 223 - -
Tsu04g00302 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Tsu04g00302 227 MobiDBLite consensus disorder prediction 72 156 - -
Tsu04g00302 227 SMART ring_2 177 217 IPR001841 -
Tsu04g00302 227 MobiDBLite consensus disorder prediction 85 123 - -
Tsu04g00302 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu04g00302 Tsu-Chr4 2730889 2735540 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00302 1 226 C3H Transcription Factor Family AT5G15790 57.576 1.36e-91 267
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00302 - - gmx:100788192 394.43