Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00298 ATGAACAAAAGAATTCTGCGGCTTCGACTGGAATCCTGCAAATCAAGGTATTCATGTGCTGATGAAATAGTGAATCATCTCCGCTCAAGTTATTCTGAATATCGCCGAATGAAATATCAAATACTGATTCAATTTGTTCGCAACACCCTTAATTTCACCAACAATACTCGTAACAACGAGAAGGATGACGACGTGGATGGTGAAAGTGATTCTTCTAGAAAGAAACGTAAgaagatagaagaagaagaagaagaagagtctCTGAAGATGGAAGATACTTTGCAGCATATGACAACAACAAGCTCGTCTACCTCTGTTTTGGTTTCAGCTCCCGGGAAAGTATCAGCGGaggagaaagagagaaagaaaggacCAATGTTTAAGGATTTGGGTGGGATGAAAGAGATAGTTGAGGAATTAATCAAGATTCTTGTGCCATTGTTCAATCCGAAGCTGCGTAGAGAGTTAGGAGTGAAACCAATAGGTGGCATTTTGTTACATGGAGTACCTGGTTGTGGCAAGACTAGACTAGCCCATGCTATAGCTTATGAGACTGGTTACAATTTCTATCCTACTTCTGCCACTTCAATCGTTTCTGGTGTTTCAGGTGACTCTGAAAAGAATATCCGGGAGCTTTTCTCTATAGCTAAAAGGACTGCGCCGTCAATTATCTTTATTGACGAGATTGATGCAATTGCTTCAAATAGAGATAATTTACAGCGTCAGATGGAGACACGAATTGTCACCCAAATCATGCTTTGTATGGATGAAGTTAATAACGATGACTACGACGACTGTGATTCAGAGACTTCCAACCACGTTCTTGTAATTGGAGCCACAAATAAGCCCAATGCTATTGAACCTTCTCTCAGAAGGCCTGGTCGTTTTGATTGGTTTGTTGGTGCTGATCTCGAAGCTCTTGCCAACGGAGCTGGCGTTGTGGCAATGAACAGGATAATTAATGAAACCAAACACAAATTATCTCAACATCTCACCACTGAGCCCGATCAAGACCACTGGAAGAAACCTTTGTTGGCTCAAGATGAGTTAGAGAAATGTGCAATCACAATGTCTGATTTTGAGGAAGCAGCCAAATTGGTACAACCTTCATTAGCAAGAGAAGGATTCACTCCCATTCCTAATGTTAAATTGGAAGATGTTGGCGCGCTCGATCGTGCAAGAGAACTGTTTAATCTCTACATTCTACTGCCTATTAAACATCCCGGTGCTTTTGAGggATATGTGAAGAATCTTGAAACAGGAATTTTACTTTATGGGCCTCCAGGTTGTGGTAAAACGCTGATCGCCAAAGCTGTTGCCAATGAGGCCGGTGCTAATTTCATTCATGTTAAGgGACCTGAgcttttaaataaatttgttggaGCAAGTGAGAATGAAGTCCGAACAATATTTAGTCGTGCAAGGACTTGTGCACcttgtataatattttttgacgAGGTGGATGCTTTGACAGCAAAGCGTGGTGGTGAAGAAGGTGGACGAGTAATTGAAGGAGTGTTGACCCAGTTGCTGATTGAGTTACATGGTGGAGATCAGCGCAAAGGTGTTTTTGTGATTGGTGCAACAAACAGgCCTGAGGCAATGGACCCTGCTGTCTTACGACCTGATAGATTTGGTAAACTTCTTTATGTTCCTCTGCCAACCCCAGACGACCGtgttaaaatattgaaaactcTCGCAAAGGGTAGGCCTATTGATGCCAGTGTGGATTTGAGTGCCATTGGAAGAATGGAAGATTGTGAAAACTTTAGTGGCGCTGATCTTGCTGCATTGatggatGAAGCAGGGATGGCTGCTCTCATTGAGAAGTGGACCTCAACGGAGAAAACTAGTGGCACCCTCAAGACATGTCATTTTGAGGTAGCAATGAGTAAAGTCTCTCCCTCTGTGTCCCAATCGCAAAGGGAGTACTATGACCGTATTTCAAAAAGCCTTAAAGCACTTTGA 1968 0.4029 MNKRILRLRLESCKSRYSCADEIVNHLRSSYSEYRRMKYQILIQFVRNTLNFTNNTRNNEKDDDVDGESDSSRKKRKKIEEEEEEESLKMEDTLQHMTTTSSSTSVLVSAPGKVSAEEKERKKGPMFKDLGGMKEIVEELIKILVPLFNPKLRRELGVKPIGGILLHGVPGCGKTRLAHAIAYETGYNFYPTSATSIVSGVSGDSEKNIRELFSIAKRTAPSIIFIDEIDAIASNRDNLQRQMETRIVTQIMLCMDEVNNDDYDDCDSETSNHVLVIGATNKPNAIEPSLRRPGRFDWFVGADLEALANGAGVVAMNRIINETKHKLSQHLTTEPDQDHWKKPLLAQDELEKCAITMSDFEEAAKLVQPSLAREGFTPIPNVKLEDVGALDRARELFNLYILLPIKHPGAFEGYVKNLETGILLYGPPGCGKTLIAKAVANEAGANFIHVKGPELLNKFVGASENEVRTIFSRARTCAPCIIFFDEVDALTAKRGGEEGGRVIEGVLTQLLIELHGGDQRKGVFVIGATNRPEAMDPAVLRPDRFGKLLYVPLPTPDDRVKILKTLAKGRPIDASVDLSAIGRMEDCENFSGADLAALMDEAGMAALIEKWTSTEKTSGTLKTCHFEVAMSKVSPSVSQSQREYYDRISKSLKAL 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00298 655 Gene3D - 298 374 - -
Tsu04g00298 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 651 IPR027417 -
Tsu04g00298 655 SMART AAA_5 418 555 IPR003593 -
Tsu04g00298 655 SMART AAA_5 160 304 IPR003593 -
Tsu04g00298 655 Pfam ATPase family associated with various cellular activities (AAA) 422 552 IPR003959 GO:0005524|GO:0016887
Tsu04g00298 655 Pfam ATPase family associated with various cellular activities (AAA) 164 299 IPR003959 GO:0005524|GO:0016887
Tsu04g00298 655 Gene3D - 380 645 IPR027417 -
Tsu04g00298 655 Gene3D - 111 297 IPR027417 -
Tsu04g00298 655 PANTHER AAA-FAMILY ATPASE 299 651 - -
Tsu04g00298 655 PANTHER AAA-FAMILY ATPASE 9 297 - -
Tsu04g00298 655 MobiDBLite consensus disorder prediction 53 122 - -
Tsu04g00298 655 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 299 651 - -
Tsu04g00298 655 MobiDBLite consensus disorder prediction 93 110 - -
Tsu04g00298 655 CDD AAA 421 553 - -
Tsu04g00298 655 Gene3D - 554 631 - -
Tsu04g00298 655 CDD AAA 159 297 - -
Tsu04g00298 655 MobiDBLite consensus disorder prediction 57 92 - -
Tsu04g00298 655 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 9 297 - -
Tsu04g00298 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 365 IPR027417 -
Tsu04g00298 655 ProSitePatterns AAA-protein family signature. 523 541 IPR003960 GO:0005524|GO:0016887
Tsu04g00298 655 Pfam AAA+ lid domain 575 612 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00298 Tsu-Chr4 2706216 2709857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00298 354 636 Calmodulin-binding Proteins AT3G56690 42.254 4.56e-61 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00298 K14571 - gmx:100809594 710.679