Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00296 atgggAAGGGGTAGGGTTCAGCTGAAACGGATCGAGAACAAAACAAGTCAACAAgtgacatttttcaaaagaagaaCTGGACTTCTCAAGAAAGCTAATGAAATTTCTGTTCTTTGTGATGCTCAAGTTGCTTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTATTCCTCTGCACCAAGCAGCATGGAAGACATCTTGGAAAGATATGAGAGACAAAACCATACAGAACTTACTGGACCTACCAATGAAACACAGGGAAACTGGACTTTTGAATACATGAAGCTCACTGCTAAAGTTCAAGTCTTGGAGAGGAACTTAAGGAACTTTGTGGGACATGATTTGGACCCTTTGAGTGTGAAAGAGCTTCAGAATTTGGAGCAACAGCTTGACACATCGCTAAAGCGCATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCAGAGCTGCATAAAAGGGCAAGGGCATTACAGGAGCAAAACAGCAAGCTAGCTAAGACAAAGGAGAAAGAGAAGACAGTGAGTGAACATCCAAAGAGAGGCCTAGAAACCATAGGCTTAGGGCAATGTTCATCCACTCTTAACTTGATTTGTCAACCAGAGgtgccaccaccaccacaaagACTGGTTCCTTCTCTAAATCTCAGGGATCCTTTACAAGCAAGAGGGACATTGGAAATGGAAGAAACAGGTGAAGCTCAAACTGTTCCTAGAAGCAATAATAGTCTCATTCCAGCATGGATGCTACAACATCTTAATAACTAG 774 0.3889 MGRGRVQLKRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSAPSSMEDILERYERQNHTELTGPTNETQGNWTFEYMKLTAKVQVLERNLRNFVGHDLDPLSVKELQNLEQQLDTSLKRIRTRKNQVMNQSISELHKRARALQEQNSKLAKTKEKEKTVSEHPKRGLETIGLGQCSSTLNLICQPEVPPPPQRLVPSLNLRDPLQARGTLEMEETGEAQTVPRSNNSLIPAWMLQHLNN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00296 257 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 225 - -
Tsu04g00296 257 Coils Coil 121 170 - -
Tsu04g00296 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu04g00296 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu04g00296 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu04g00296 257 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Tsu04g00296 257 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Tsu04g00296 257 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu04g00296 257 Pfam K-box region 86 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu04g00296 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu04g00296 257 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tsu04g00296 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu04g00296 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu04g00296 257 PANTHER MADS BOX PROTEIN 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00296 Tsu-Chr4 2690852 2697602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00296 1 177 MADS-box Gene Family AT1G26310 59.890 7.79e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu04g00296 K-box 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00296 K09264 - gmx:100788956 328.561