Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00295 ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATAGAGAACAAAATAAATCGACAAGTTACATTTGCTAAGAGAAGAAATGGTCTTCTTAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTACTCGTGGCAAGCTTTATGAATTTTGTAGCACTTCTAACATGCTCAAAACTCTTGATAGGTACCAGAAATGCAGTTATGGTGCTGTTGAAGTTAGCAAACCTGCCAAAGAACTTGAGAGTAGCTACCGTGAATACTTGAAGCTGAAACAAAGATTTGAAAATCTTCAAAGAACCCAAAGAAATCTTTTAGGGGAAGACTTGGGCCCATTGAGTTCTAAAGATCTTGAGCAGCTTGAAAGGCAATTGGATTCATCTCTCAAGCAAGTCAGGTCTACAAAGACACAATTCATGCTGGATCAATTAGCTGATCTTCAAAATAAGGAACAGATGTTGGTAGAAGCAAACAGATCCTTGTCAATTAAGTTGGATGAAATCAACTCCAGAAACCAGTACAGACAATCATGGGAAGCCGGTGAACAAAGCATGCAATATGGTGGTCCACAGAATGCTCACTCTCAGAGCTTCTTCCAGCAGTTGGACTGCAATCCCACATTGCAGATTGGTTCTGACTATAGGTACAACAATGTTGCAACAGATCATGAGATAGCTTCAACAAGTCAAGCTCAACAACAAGTGAATGGATTTGTTCCTGGATGGATGCTTTAA 753 0.3931 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTSNMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKQRFENLQRTQRNLLGEDLGPLSSKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLSIKLDEINSRNQYRQSWEAGEQSMQYGGPQNAHSQSFFQQLDCNPTLQIGSDYRYNNVATDHEIASTSQAQQQVNGFVPGWML 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00295 250 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu04g00295 250 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 232 - -
Tsu04g00295 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu04g00295 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu04g00295 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu04g00295 250 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Tsu04g00295 250 Coils Coil 84 114 - -
Tsu04g00295 250 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu04g00295 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tsu04g00295 250 PANTHER MADS BOX PROTEIN 1 232 - -
Tsu04g00295 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu04g00295 250 Coils Coil 124 144 - -
Tsu04g00295 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu04g00295 250 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Tsu04g00295 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu04g00295 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00295 Tsu-Chr4 2672890 2678635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00295 1 250 MADS-box Gene Family AT5G15800 71.863 3.37e-121 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu04g00295 K-box 2.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00295 K09264 - gmx:100785322 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02291 06 29040227 29047693 Tsu04g00295 04 2672890 2678635 PCT