Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00288 ATGGGTTTCTCTTTGTTATCAAAACCATCTCCTTTCATTTTGTTCTTCATTCTACTTTCTTCCACTTGCTTCACTTCAACAGatgcTTATGACCCACTTGACCCAAATGGGAATATCACAATCAAATGGGATGTTGTGCAATGGACACCTGATGGTTATATGGCTGTTGTTACGATGACTAACTTCCAACAATATCGACACATTGCTGCGCCCGGTTGGTCCCTAGGATGGACGTGGGCGAAAAAGGAAGTAATCTGGAGCATGGTGGGATCGCAGACCACTGAACAGGGTGACTGTTCAAAATTCAAAGGAAATGTCCCCCATTGCTGTAAGAAGGACCCTACAGTTGTTGACTTTCTTCCGGGAACACCGTATAATCAGCAAGTCGCAAATTGCTGCAAAGGCGGGGTCCTCAGTTCATGGGCACAAGATCCTACCAATGCAGTGGCGTCATTTCAAATCAGCGTTGGTAGGGCTGGAACTACAAACAAAACGGTTAAAGTCCCTAAAAACTTCACCTTGAAAGCACCCGGACCCGGTTATACTTGTGGGCCGGCGAAAATTGTGAGGCCTACTCAGTTTATTCAACCAGATAAACGTAGAGTAACACAAGCACTCATGACTTGGAATGTTACTTGTACGTATTCTCAATTTCTAGCGCAGAAAACTCCCACTTGTTGTGTTTCCCTTTCAGCCTTCTATAACGACACGATTGTACCCTGCCCAACTTGTGCATGTGGCTGCCAGAGTAACTCATCACAGTCGGGTAGTTGTGTAAATCCAAATACGCCACATTTAGCCTCGGTTGTTGCTGGTAATGGAAAGAATAATCTATCACCTTTGGTACAATGTACCAGCCACATGTGCCCAATCCGAATCCATTGGCATATCAAAGTTAACTACAAGGAATACTGGCGTGTGAAGGTTTCTATAACTAATTTTAATTACCGTATGAATTACTCCAATTGGAACTTGGTAGTCCAGCATCCAAACTTCGATAATCTGACCCAGTTATTCAGTTTCGACTACAAGTCATTAAATCCTTATGGTTCAATAAATGATACAGCAATGTTGTGGGGAGTGAAGTTCTACAATGATTTTCTTAATCAGGCTGGCCCTAGTGGCAATGTTCAATCTGAGCTACTCTTCCGAAAGGAGGATATGTCACATTTCAGTTTTGAGAAGGGTTGGGGTTTCCCACATAGAATCTACTTCAATGGAGACAACTGCGTGATGCCACCACCCGATGCATATCCATGGTTACCTAATGGCAGTTCTCGGCAAGAGGTTTCATTGTTAGCTTTAGTAATGGCCTCCTTGGTAGTCTTAGTATTTTATTCATACATTTAA 1350 0.4289 MGFSLLSKPSPFILFFILLSSTCFTSTDAYDPLDPNGNITIKWDVVQWTPDGYMAVVTMTNFQQYRHIAAPGWSLGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNVPHCCKKDPTVVDFLPGTPYNQQVANCCKGGVLSSWAQDPTNAVASFQISVGRAGTTNKTVKVPKNFTLKAPGPGYTCGPAKIVRPTQFIQPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSAFYNDTIVPCPTCACGCQSNSSQSGSCVNPNTPHLASVVAGNGKNNLSPLVQCTSHMCPIRIHWHIKVNYKEYWRVKVSITNFNYRMNYSNWNLVVQHPNFDNLTQLFSFDYKSLNPYGSINDTAMLWGVKFYNDFLNQAGPSGNVQSELLFRKEDMSHFSFEKGWGFPHRIYFNGDNCVMPPPDAYPWLPNGSSRQEVSLLALVMASLVVLVFYSYI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00288 449 PANTHER PROTEIN COBRA 7 447 IPR006918 GO:0010215|GO:0031225
Tsu04g00288 449 PIRSF COBRA 4 449 IPR006918 GO:0010215|GO:0031225
Tsu04g00288 449 PANTHER COBRA-LIKE PROTEIN 7 447 - -
Tsu04g00288 449 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00288 Tsu-Chr4 2594956 2598923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00288 1 446 COBRA Gene Family AT3G02210 72.506 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00288 - - gmx:100783820 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02281 06 28765936 28769070 Tsu04g00288 04 2594956 2598923 PCT
Tsu04g00288 04 2594956 2598923 Tsu06g02280 06 28759936 28765288 PCT