Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00287 ATGGCCCAATCATTTGGACAAACCGAAATTAATTGGGACAAGCTAGATAAAACTAAGTTCTATGTCGTTGGTGCTGGACTCTTTACTGGTGTTACAGTTGCACTTTACCCGGTTTCGGTTGTGAAAACTAGGCTGCAGGTAGGAACAAAGGCTTCTATAGAAAAAAATGCCTATTCTGTTGCAAAAGGATTACTTAAAACAGATGGCATCCCTGGTTTGTATAAAGGGTTTGGCACGGTCATCACTGGTGCAATACCAGCCAGAGTTATATTCATGTCGGTTTTAGAGACTACAAAGGTGTATGCCTTTAAAATGCTGGAACCATTTGGACTATCTGGAACTACTCAGGCTGCCTTAGCAAATGGATTTGCAGGCATGACATCGTCACTTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCTGGCCATACCAAATATAGTGGGGGTCTGGATGTTGCTCGTAAGATTATAAAGGCTGATGGCATTCGGGGATTGTATCGAGGGTTTGGTCTTTCTGTTGTTACTTATTCACCTTCTAGCGCAGTTTGGTGGGCAAGTTATGGTTCAAGCCAACGCTACATTTGGAGATTGTTGGATCAAGGTGGAAAATATGACGAAGTTGCTCCAAGTGTACCGAAGATTATGTTAGTTCAGGCTGCGGGAGGTATTATTGCTGGTGCAACTGCTTCCTGCATTACAACCCCATTGGATACTATCAAGACACGGCTACAGGTGATGGGACTTGAGAAGAGAAGCTCTATCAAACAAGTTACTAAAGATTTAATCAAAGAAGATGGTTGGAAAGGTCTATATAGAGGGCTTGGTCCAAGATTTTTTAGCATGTCTGCATGGGGCACTTCAATGATATTGACTTATGAGTATCTGAAACGCATATGCGCAAAAGACGAATAG 945 0.4212 MAQSFGQTEINWDKLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVGTKASIEKNAYSVAKGLLKTDGIPGLYKGFGTVITGAIPARVIFMSVLETTKVYAFKMLEPFGLSGTTQAALANGFAGMTSSLFAQSVFVPIDVVSQKLMVQGYSGHTKYSGGLDVARKIIKADGIRGLYRGFGLSVVTYSPSSAVWWASYGSSQRYIWRLLDQGGKYDEVAPSVPKIMLVQAAGGIIAGATASCITTPLDTIKTRLQVMGLEKRSSIKQVTKDLIKEDGWKGLYRGLGPRFFSMSAWGTSMILTYEYLKRICAKDE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00287 314 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 7 314 - -
Tsu04g00287 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Tsu04g00287 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Tsu04g00287 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Tsu04g00287 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Tsu04g00287 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 314 - -
Tsu04g00287 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Tsu04g00287 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Tsu04g00287 314 Gene3D Mitochondrial carrier domain 20 314 IPR023395 -
Tsu04g00287 314 Pfam Mitochondrial carrier protein 25 104 IPR018108 -
Tsu04g00287 314 Pfam Mitochondrial carrier protein 118 205 IPR018108 -
Tsu04g00287 314 Pfam Mitochondrial carrier protein 228 313 IPR018108 -
Tsu04g00287 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00287 Tsu-Chr4 2582435 2588921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00287 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 74.919 1.03e-166 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00287 K15121 - gmx:100781796 542.732