Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00280 ATGAAGTCAACCTTAGCTATCCTTGTTCTTGGAGTTTCATGTCTCTTGTTAGCATCTATTGTTGGAATGATAGTTTTTGTTCGAAGGAGAAGAAGATGTAAATCTCAtcttaaaatttggaaaaaaggTTTGTCAACTTTACCATCCCATTCGAAGGAGATAAGAGCCGCTACAAACAACTTTGAAGATATTTTTATCATTGGGGTTGGAGGGTTCGGTAATGTGTACAAAGGTTACATTGATGGAGTTACATCCATTGCGATAAAACGTCTTAAACCCAGTTCTCAACAAGGTGTAAATGTGTTCATGAATGAGATCGAGTTGCTCTCGCAGCTTCATCATAATCATCTGGTTTCTCTCATTGGATATTGCAACAAAGGTGCAGAGTTTACTACCGATGACGAGAGTGATTTGTGTTTCACAAGTAGTAGTAGTGATGACTGTTTCGCAGTAAATGGAAGTGTGGCTGCACTGGAGAATGGACCCTGTTATCTTGGACTACCTTATGCTGCTGAACAATCTTGA 525 0.381 MKSTLAILVLGVSCLLLASIVGMIVFVRRRRRCKSHLKIWKKGLSTLPSHSKEIRAATNNFEDIFIIGVGGFGNVYKGYIDGVTSIAIKRLKPSSQQGVNVFMNEIELLSQLHHNHLVSLIGYCNKGAEFTTDDESDLCFTSSSSDDCFAVNGSVAALENGPCYLGLPYAAEQS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00280 174 PANTHER OS07G0166700 PROTEIN 4 129 IPR045272 GO:0004714|GO:0006468
Tsu04g00280 174 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Tsu04g00280 174 ProSiteProfiles Protein kinase domain profile. 61 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00280 174 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 4 129 - -
Tsu04g00280 174 Pfam Protein tyrosine and serine/threonine kinase 67 128 IPR001245 GO:0004672|GO:0006468
Tsu04g00280 174 Gene3D Phosphorylase Kinase; domain 1 20 131 - -
Tsu04g00280 174 SUPERFAMILY Protein kinase-like (PK-like) 52 127 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00280 Tsu-Chr4 2558828 2559799 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00280 53 129 Receptor kinase-like Gene Family AT5G39000 61.538 3.51e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Tsu04g00280 PK_Tyr_Ser-Thr 5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00280 - - mtr:MTR_7g015420 150.599