Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00278 ATGGGAAATATGCTTGTAATATATCCAAAGCATAAAAGTTCATACAAGAAACAATCACCATCATTTATAAAAGAGCTATGCTATCAATTTTCTCTGGAAGATCTTAAGAAATCAACCAATAACTTTGATAAAGATCGAAAAATGGGAGAATCACAATACTATATAATGTACAAAGGTTATCTCAAACATAATGGTCAAAATGACTATCCAATAGCATTGATGCGGATGAGAAATTTAGACTACGAGTGGCAGTTCCAGAAGGAAATTGAACTCAACTGCAAGCTTTGTCACCCGAATTTGACATCTTTTATAGGATTTTGTGGCGAAAAAGATGAGAAAATTCTAGTGTGCCGAAAAGATGACATTGTCAATGGCTCTCTCAATGATCACTTACTTTCAAGGGATATGGAATCACTGTCATGGAAGAAAAGGCTTGAAATATGCATTGGAGCGGCAAAAGGGCTACACTACCTTCATACTGGAGCAAAGCGCACAATTTTTCACTGTGACATAAAACCAGGCAACATTCTTTTAGGTAACAACATGGTACCAAAACTCTGGCAACTTGGATTTTCCTTGCAAGGGAAGCTTTCTAACTTGAAGTCAATACCAATTGAAGTCAACGGAATAATCgGTACATTTGGTTACTTAGCTCCAGAGTATATCGAAACATCAGCTTTCACAGATAAATGTGACATTTACTCTTTTGGTATGGTTCTACTAAATGTAGCATGCACAAACTGCAACCTTACAACCatagaaaagataaatatgTTCCGCTTGGAGGaggaaattgtgtttttagaagaCCATAATGAGGTTTTAGATGAGAATGGAATTATTGGAGATAACTTTTGGGACAAGTTCCTAGAAGCTGAGATTATTGATCCCATTCTCATGAGGTTGATTTCAATACCATGTTTGGAAGTGTTCATGGATATCGTGAAAAGATGCTTAAAATCTGATCCAAATGAAACACCAGCAATGGGTGAAGTTGAGGTTGAACTTGAGCATGCTCTGGCACTGCAGGAGGAGGAAGAAAAGTTTTGGAAATAG 1056 0.358 MGNMLVIYPKHKSSYKKQSPSFIKELCYQFSLEDLKKSTNNFDKDRKMGESQYYIMYKGYLKHNGQNDYPIALMRMRNLDYEWQFQKEIELNCKLCHPNLTSFIGFCGEKDEKILVCRKDDIVNGSLNDHLLSRDMESLSWKKRLEICIGAAKGLHYLHTGAKRTIFHCDIKPGNILLGNNMVPKLWQLGFSLQGKLSNLKSIPIEVNGIIGTFGYLAPEYIETSAFTDKCDIYSFGMVLLNVACTNCNLTTIEKINMFRLEEEIVFLEDHNEVLDENGIIGDNFWDKFLEAEIIDPILMRLISIPCLEVFMDIVKRCLKSDPNETPAMGEVEVELEHALALQEEEEKFWK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00278 351 Coils Coil 258 278 - -
Tsu04g00278 351 Gene3D Transferase(Phosphotransferase) domain 1 122 349 - -
Tsu04g00278 351 PANTHER TYROSINE KINASE FAMILY PROTEIN 15 347 - -
Tsu04g00278 351 PANTHER OS07G0166700 PROTEIN 15 347 IPR045272 GO:0004714|GO:0006468
Tsu04g00278 351 Gene3D Phosphorylase Kinase; domain 1 5 118 - -
Tsu04g00278 351 SUPERFAMILY Protein kinase-like (PK-like) 15 335 IPR011009 -
Tsu04g00278 351 Pfam Protein kinase domain 44 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00278 351 ProSiteProfiles Protein kinase domain profile. 42 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00278 351 SMART serkin_6 42 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00278 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00278 Tsu-Chr4 2544873 2550509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00278 14 348 Receptor kinase-like Gene Family AT3G51550 36.795 2.53e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Tsu04g00278 Pkinase 7.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00278 - - mtr:MTR_7g015750 391.349