Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00272 ATGAATATTTGCAGTGGAGTTTGTAGTGTGTCTTGTGAGGGTGCTCCCTTTGCTTTCTCTGAAAGGCTCTTGGTTGATACTAATCTAGATACTTCGAGCCCTGATACTTATAGATCACCTCCTGCTCCTCTCCCTTTCAATGTGACATCTGGTGCCACTCAGACTGCACCTGTGGCTCTAGAAATTAGTTGTGACAAGAACAATACACCCTTGCTTTCTACAAATTCTAATTCAGTTCAAGAACCATCTGGAGATAATCACGGAACCTCAGCTAAGTCGGACGAACCAAAGGAATCAGAATGCAAAGGCCGGACTGATTTAGAGCTAGACTCGGCAAAGGATCCTGAAATTGAACTTTCAAAGTTGGAATATGATGCAGAAAATCCAAAACTCACCATAATTTGTGACCATCATTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAATCTTGCCCTGTCTGCGATCAGGATATGGAGAAGATTTCTCCAGCACATAATTTTGCTGCTGAGGTGTGA 525 0.4267 MNICSGVCSVSCEGAPFAFSERLLVDTNLDTSSPDTYRSPPAPLPFNVTSGATQTAPVALEISCDKNNTPLLSTNSNSVQEPSGDNHGTSAKSDEPKESECKGRTDLELDSAKDPEIELSKLEYDAENPKLTIICDHHFHLACILEWMERSESCPVCDQDMEKISPAHNFAAEV 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00272 174 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 10 122 - -
Tsu04g00272 174 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 123 161 - -
Tsu04g00272 174 MobiDBLite consensus disorder prediction 69 87 - -
Tsu04g00272 174 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 123 161 - -
Tsu04g00272 174 SUPERFAMILY RING/U-box 126 164 - -
Tsu04g00272 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 173 IPR013083 -
Tsu04g00272 174 MobiDBLite consensus disorder prediction 88 112 - -
Tsu04g00272 174 ProSiteProfiles Zinc finger RING-type profile. 135 158 IPR001841 -
Tsu04g00272 174 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 10 122 - -
Tsu04g00272 174 Pfam RING-H2 zinc finger domain 128 157 IPR024766 GO:0008270
Tsu04g00272 174 MobiDBLite consensus disorder prediction 69 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00272 Tsu-Chr4 2428618 2430636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00272 23 161 C3H Transcription Factor Family AT5G41350 44.586 7.93e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00272 - - gmx:100816369 221.861