Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00271 ATGGCAAactcaataaacaaaaaaaattacacaaaaatcACCCTAATATCTCTATTTTTGCTATTGTACTCTCTGGTTGCTTACTCATACAACCCTGATTACAACTTAGCCATCAATTGTGGCTCCTCAACAAACACTACTTCCTTAGACAATCGAATTTGGATTGGTGACAATATTGATAATACAATCGAATTTGGGTTGGtgataataatattgataacaCAAAAACTCTTTTCCTTCATTGAACAAAATACCACAAATCCATCACTTAAATTAGCCCCTAATTCCCTCTCAAACACCCAAATTCCATTCACAACTGCACGTGTCTCTCTATCAAATTTCACTTACTGTTTTCCTATCAATAATATCACTAATTCCCCTGTTTTTATTCGCCTTCATTTTTACCCAACATCATATCAAAACTTTGAAATTTCTAATGCAATTTTCTCTGTTGAAGTAAACAACAATCTTACTCTTCTTAAAAACTTCAACCCTTCACATTGGCAGCTTCATGATGAGAAAAAAATCACGAAAGAGTATTGcatccaaatcaaaccaaatgaGAATTTGCTAAATATAACTTTTATTCCAAACAACATAAACACTTCAAATGTTTATTATGCTTTCATTAACGGAATTGAAATTGTGTCTATGCCTTCTTTTCTCTATTACACTGATCTCGATGACTCAAACTATCATTTGAATTTACTTGACACAGACAACCGGGAATACCAAATTCACAACGATAAAGCTTTGGAGACTGTTTATAGAGTTGACGTTGGTGATAATCAAGTTCCACCAAGTAAAGATACAGGTATGTTTCGTAATTGGGATAATGATTTTCCTCTTTACTTGGAGAAACAATATCCACTAAGTGTATCAAGTGATTTTGGTGATCAACTAAACTATTTAAGAAACACCGTTCCAAATTACACTGCACCAGAAGTTGTATACTTAACTGCAAGAAGCTATGGAATGAATGCGACAGAGGATTATAATGTAACTTGGAATTTTGAAGTTGATTCTAATTTTACTTATATGGTAAGGTTGCatttttgtgagtttgattACCATATCAACAATGAAGGTGATAGAGTTTTTCAGATTTTTATAGATGATACTTTGGCTGAACAAAACGCTGATGTAATTCGTTGGAGTGGTGGTAACAGGGTTCCTGTTTATAGGGATTATGCTGTGACTATGTACCATCAAGAAGGAAGCTCTCAAATTGAAAGAGTTAATCTTACAATCAAGCTTCAACGAGCACCAAACAGTACCTACACAGTATATTCTGATGTGACGTTGAATGGAATCGAGATGTTCAAAATTAGTGATTCAAATAACAATCTTGCTGGTTTGTATCCAATCAAACACGTTGTTCTATCTCCAAAGCAATTACCAACTCAACAATCAAAGTTAAAGAGGTCAACCATAGTCATGGTTTTTGTGGTTGGATTATCATGTCTCTTGCTAGCATTTGTAATGGGAAtaatagtttttcaaaaaaggagaagaagatTAGAATCTCATCTTGAAATGGAGGCAAGTTCATGGAAGACAAAGAAAGAAGGTTCATCAGCTTTACCATCACATCTGTGTCGCTATTTTAGAATAGCAGAGATAAGAGCCGCAACAAACAACTTTGAAGATATATTTATGATCGGGGTTGGGGGATTCGGCAACGTGTACAAAGGTTACATCGATGAAGTTACACCTGTTGCGATAAAACGTCTTAAATCAGGTTCTCGACAAGGTGTAAACGAGTTCTTGAATGAGATTGAGTTGCTCTCTCAGCTTCGTCATATTCACTTGGTTTCCCTCATTGGATATTGCAACGATGACGCTGAAATGATTCTCATTTATGACTTCATGCAACGTGGCACTCTCCGTGAAAATCTATATGGTTCAAATAATGAACCTCTTAGGTGGAATAAGAGACTTGAGATTTTATTGGGTGCAGCGAGGGGATTGCATTATCTTCATACAGGTGCAAAGCACAATATCATACATCGTGATGTGAAGAGTACAAACATATTGTTGGATGAAAAGTGGGTGGCTAAGGTTTCTGATTTCGGCTTGTCAAAAGTGGGACCCATGGGAATATCGAATAGTCATATCAGCACTATGGTGAAGGGTAGTATAGGGTATTTGGATCCAGAATGCTACTTGCGTCATAGGTTAACTCTAAAGTCTGATGTGTACTCTTTCGGTGTGGTACTTCTTGAGGTATTAT 2233 0.3448 MANSINKKNYTKITLISLFLLLYSLVAYSYNPDYNLAINCGSSTNTTSLDNRIWIGDNIDNTIEFGLVIIILITQKLFSFIEQNTTNPSLKLAPNSLSNTQIPFTTARVSLSNFTYCFPINNITNSPVFIRLHFYPTSYQNFEISNAIFSVEVNNNLTLLKNFNPSHWQLHDEKKITKEYCIQIKPNENLLNITFIPNNINTSNVYYAFINGIEIVSMPSFLYYTDLDDSNYHLNLLDTDNREYQIHNDKALETVYRVDVGDNQVPPSKDTGMFRNWDNDFPLYLEKQYPLSVSSDFGDQLNYLRNTVPNYTAPEVVYLTARSYGMNATEDYNVTWNFEVDSNFTYMVRLHFCEFDYHINNEGDRVFQIFIDDTLAEQNADVIRWSGGNRVPVYRDYAVTMYHQEGSSQIERVNLTIKLQRAPNSTYTVYSDVTLNGIEMFKISDSNNNLAGLYPIKHVVLSPKQLPTQQSKLKRSTIVMVFVVGLSCLLLAFVMGIIVFQKRRRRLESHLEMEASSWKTKKEGSSALPSHLCRYFRIAEIRAATNNFEDIFMIGVGGFGNVYKGYIDEVTPVAIKRLKSGSRQGVNEFLNEIELLSQLRHIHLVSLIGYCNDDAEMILIYDFMQRGTLRENLYGSNNEPLRWNKRLEILLGAARGLHYLHTGAKHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPMGISNSHISTMVKGSIGYLDPECYLRHRLTLKSDVYSFGVVLLEVL 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00271 744 Gene3D - 32 219 - -
Tsu04g00271 744 Gene3D - 250 443 - -
Tsu04g00271 744 Gene3D Transferase(Phosphotransferase) domain 1 624 744 - -
Tsu04g00271 744 Pfam Malectin-like domain 95 443 IPR024788 -
Tsu04g00271 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672|GO:0006468
Tsu04g00271 744 Gene3D Phosphorylase Kinase; domain 1 509 623 - -
Tsu04g00271 744 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 28 744 - -
Tsu04g00271 744 Pfam Protein tyrosine and serine/threonine kinase 553 743 IPR001245 GO:0004672|GO:0006468
Tsu04g00271 744 SMART serkin_6 548 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00271 744 ProSitePatterns Protein kinases ATP-binding region signature. 554 576 IPR017441 GO:0005524
Tsu04g00271 744 ProSiteProfiles Protein kinase domain profile. 548 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00271 744 PANTHER OS07G0166700 PROTEIN 28 744 IPR045272 GO:0004714|GO:0006468
Tsu04g00271 744 SUPERFAMILY Protein kinase-like (PK-like) 525 744 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00271 Tsu-Chr4 2418348 2425814 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00271 25 744 Receptor kinase-like Gene Family AT3G51550 44.311 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Tsu04g00271 Malectin_like 1e-32 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00271 - - mtr:MTR_7g015420 1107.82