Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00267 ATGGTTTATAGAGTCAACGTTGGTCAAAATCAAGTTCAACCAAGTGATGATACAGATGACACTTTGGCAGAAGAAAATGCTGATGTGATTCGTTGGGCTGGTGCTCGATTGGTTCCTGTTCATCAGGATTATGCTGTGACTATGTACCCTAAAGAAGGAAACTCTCAAATTGAAAGAGTTAATATTTCAATCAAACTTCAACGATTGCCAAATCATTCCTCCTTAACAAGATATCGCGATGTCTTGTTGAATGGAATCGAAATTTTCAAGATAAGTGACGACAATAAAAATCTTGCAGGAGTAAATCCCACATTTTTACCTACAAAGGAACCATTATTACCTAGTCCAAAATCAAAGTCAAAGAACTCAACCATAGTCATTTTGATTGCGGTTGGAGTTTCATGTCTCTTGTTAGCATCTGTTGTTGGAATGATAGTTTTTGTTCGAAGGAGAAGAAAATTTGAATCTCGTCTTGAAATGGAAGAAAGTTCATGGCAGACAAAGACAGATGGTTCGTCAATTTTACCATCCCATTTGTGCCGCTATTTTACAATAGCAGAGATAAGAACCGCTACAAACAactttgatgatatttttatcattggGGTTGGAGGGTTCGGTAACGTGTACAAAGGTTACATCGATGGAGTTATACCCATTGCGATAAAACGTCATAAACCTGGTTCTCAACAAGGTATTAACGAGTTCAGGAATGAGATAGAGTTGCTCTCTCAACTTCGTCATATTCACTTAGTTTCCCTCCTTGGATATTGCAACGATGGTGTTGAGATGATTCTTGTTTACAACTTCATGCAACGTGGAACTCTTCATGAATATTTATATGGTTCGGATCATGAACTTCTTACTTGGAAGCAGAGGCTCGAGATTCTATTGGGTGCAGCGAGGGGGTTACATTATCTTCATACAGGTGCGAAACAAAATATCATACATCGTGATGTTAAGAGTACCAACATATTGTTGGATGAGAAATGGGTGGCTAAGGTTTCTGATTTCGGGTTATCAAAAGTGGGACCAACAGGAATGTCGATGACACACGTCAGCACTGTGGTGAAAGGTAGTATTGGGTATTTGGATCCAGAATACTACATGCGTCAAAGGTTGACTCTAAAGTCTGACGTGCACTCTTTTGGTGTTGTGCTTCTTGAGGTATTGTGCGGTAGACCTCCATTGGTTCGTTCTTCGGATAAGAAAAAAGCAAGTTTGGTCAGTTGGTTCCAAAGATGTTACAAGGAAGATTTGATAATGGAAGAGATGGTTGACCCATTCATAAAGGATTCCATAACAACTGAGTGTTTGAAATGTTATTGTCAAATGGTGTTGAGTTGTTTGCATGATGATGGAAATCAACGGATTGCGATGAGTGATTTGGTTGGGGCATTAGAGTTTGCATTGCAATTGGTAATGAGTGAGGCAAATAGTAAGTTTAGTGAGAcccaagaaaaggaaaaaagtgtACAAAGTCTACCATACCAGTTTACGAGTGATGACGGGAGTGACAAATGTTTCACGAGTAGTAGTGATGACTATGGGTCTCAAACAAGTAAAGTAGAAGGTATGCATATTGCTGGCAATCAATTTTACTCTTTTCTTTAA 1614 0.3792 MVYRVNVGQNQVQPSDDTDDTLAEENADVIRWAGARLVPVHQDYAVTMYPKEGNSQIERVNISIKLQRLPNHSSLTRYRDVLLNGIEIFKISDDNKNLAGVNPTFLPTKEPLLPSPKSKSKNSTIVILIAVGVSCLLLASVVGMIVFVRRRRKFESRLEMEESSWQTKTDGSSILPSHLCRYFTIAEIRTATNNFDDIFIIGVGGFGNVYKGYIDGVIPIAIKRHKPGSQQGINEFRNEIELLSQLRHIHLVSLLGYCNDGVEMILVYNFMQRGTLHEYLYGSDHELLTWKQRLEILLGAARGLHYLHTGAKQNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGMSMTHVSTVVKGSIGYLDPEYYMRQRLTLKSDVHSFGVVLLEVLCGRPPLVRSSDKKKASLVSWFQRCYKEDLIMEEMVDPFIKDSITTECLKCYCQMVLSCLHDDGNQRIAMSDLVGALEFALQLVMSEANSKFSETQEKEKSVQSLPYQFTSDDGSDKCFTSSSDDYGSQTSKVEGMHIAGNQFYSFL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00267 537 ProSitePatterns Protein kinases ATP-binding region signature. 201 223 IPR017441 GO:0005524
Tsu04g00267 537 SUPERFAMILY Protein kinase-like (PK-like) 172 469 IPR011009 -
Tsu04g00267 537 MobiDBLite consensus disorder prediction 1 17 - -
Tsu04g00267 537 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g00267 537 SMART serkin_6 195 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00267 537 Gene3D Transferase(Phosphotransferase) domain 1 271 494 - -
Tsu04g00267 537 Gene3D Phosphorylase Kinase; domain 1 155 270 - -
Tsu04g00267 537 CDD STKc_IRAK 201 468 - -
Tsu04g00267 537 PANTHER OS07G0166700 PROTEIN 19 495 IPR045272 GO:0004714|GO:0006468
Tsu04g00267 537 ProSiteProfiles Protein kinase domain profile. 195 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00267 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Tsu04g00267 537 Pfam Protein tyrosine and serine/threonine kinase 201 464 IPR001245 GO:0004672|GO:0006468
Tsu04g00267 537 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 19 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00267 Tsu-Chr4 2366626 2370736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00267 19 481 Receptor kinase-like Gene Family AT3G51550 50.205 7.15e-151 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Tsu04g00267 PK_Tyr_Ser-Thr 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00267 - - mtr:MTR_7g015420 656.751