Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00266 ATGTTGTTTCTTAGAAATTTCCAACCTCTCATAAATAAATACACTCTTCTCTTACTATCTTCTCACACAACCATGGCAAACTCTGTAAACAACAAAAATCACATGAAAATCACCCTACTATTTCTAATTTCTCTATTGTACCCTCTAGTTGCTAATTCATACAACCCTGATTACAAGTTAGCCATCAATTGTGGCTCCTCAACAAACACTACTGCCTCAGATAATCGAGTTTGGGTTGGTGATGATATTCATAACTCCAATCTCTTTACCTTCACACAACCAAAAACCACAAACCAATCTTTTAATACAAAGCCTAATTCCCTTTCAAATACTCAAATTCCATTCACAACAGCACGTATCTCTCTCTCAAATTTCACATACTCTTTTCCTATCAGTATCAATAATTCCCCTGTTTTTATTCGCCTTCATTTTTACTCAACTTCTTATCAAAACTTTGAACTTTCTAATGCAATTTTCTCTGTTGAAGTAAACAACAATCTTACCCTTCTTAAAAACTTCAAACCTTTAAATTGGGCTACGGACAGTTCAATCATGAAAGAATATATcatccaaatcaaaccaaatgaTAATTTGCTAAACATAACTTTCATTCCAAACAACATAAACCAGACAAATGTTTCTTATGCTTTTGTTAACGGAATTGAAGTTGTGTCTATGCCTTCTTATCTCTATTACACAAACTTCACTGATGGCCTAAGTTATCACTTAAAATCACTTGACACAGATGCCCAACCAGATTACcaacttcaaaacaacaaagcatTGGAGATGGTTTATAGAGTCAACGTTGGTCAAAAACAAGTTCCACCAGACCAAGATACAGGTATGTTTCGTAATTGGGAAATTGATTATCCTATTTACTTGAAGATACAATATTCACAAAGCATATCTAGTGGTTTTGGAGAACATCTTAACTATTTAAAAAACACCGTTCCTAATTACACTGCACCAGAAGATGTTTACTTAACTGGAAGAAGTTATGGAAAGGATGCGAAAGAGGATTATAATGTAACTTGGAGTTTTGAAGTTGATTCTACTTTTACTTATATGATAAGGTTACATTTTTGTGAGTTTGATCCGAAAATAACGAATATAGGTGATAGAGTCTTCCAGATTTTTATAGATGATATTTTGGCTGAAAATGGTGCTGATGTGTTTTCATGGAGTGATAGTCAAATATTGGTTCCTGTTCATAAGGATTATGCTGTGACTATATATTCTCTGGAAGGAAGCTCTCAAATTGAAAGAGTTAATATTTCAATCAAGCTTCAACGCTTGCCAAATAATTCGAAGCAAACAACAGCATATCAAGATGTCATATTGAATGGAATCGAGATTTTCAAGATAAGTGACAACAATAACAATCTTGCAGGAGTAAATCCCAAATATTTACCTATAAAGGAACCATTATTACCTAGTCCACAATCAAAGTCAAAGAACTCAACCATAGTCATTTTGATTGCGGTTGGAGTTTCATGTCTCTTGTTAGCATCTGTTGTTGGAATGATAGTTTTTGTTCGAAGGAGAAGAAAATTTGAATCTCGTCTTGAAATGGAAGAAAGTTCATGGCAGACAAAGACAGATGGTTCGTCAATTTTACCATCCCATTTGTGCCGCTATTTTACAATAGCGGAGATAAGAACCGCTACAAACAactttgatgatatttttatcattggGGTTGGAGGATTCGGCAACGTGTACAAAGGTTACATCGATGGAGTTATACCTGTTGCGATAAAACGTCTTAAACCTGGTTCTCAACAAGGTATTAACGAGTTCAGGAATGAGATAGAGTTGCTCTCTCAACTTCGTCATATTCACTTAGTTTCCCTCATTGGATATTGCAACGATGGTGTTGAGATGATTCTCGTTTACGACTTCATGCAACGTGGCACTCTTCGTGAATATTTATATGGTTCTGATAATGAACTTCTTACTTGGAAGCAGAGGCTCGAGATTCTATTGGGTGCAGCGAGGGGGTTACATTATCTTCATACAGGTGCGAAACAAAATATCATACATCGTGATGTTAAGAGTACCAACATATTGTTGGATGAGAAATGGGTGGCTAAGGTTTCTGATTTCGGGTTATCAAAAGTGGGACCAACTGGAATGTCGATGACACACGTCAGCACTGTGGTGAAAGGTAGTATTGGGTATTTGGATCCAGAATACTACATGCGTCAAAGGTTGACTCTAAAGTCTGACGTGTACTCTTTTGGTGTTGTGCTTCTTGAGGTATTGTGCGGTAGACCTCCATTGGTTCGTTCTTCGGATAAGAAAAAAGCAAGTTTGGTCAGTTGGTTCCAAAAATGTTACAAGGAAGATTTGATAATGGAAGAGATGGTTGACCCATTCATAAAGGATTCCATAACAAGTGAGTGTTTGAAATGTTATTGTCAAATGGTGTTGAGTTGTTTGCATGATGATGGAAATCAACGAATGTCGATGAGTGATTTGGTTGGGGCATTAGAGTTTGCATTGCAATTGGTAATGAGTGAGGAAGATAGTAAGTATAGTGAGAcccaagaaaaggaaaaaagtgtGCAAAGGCTACCATACCAGTTTACGAGTGATGATGGGAGTGACAAATGTTTCACGAGTAGTAGTGATGACTATGGGTCTCATTCAAGTAAAGTAAGCACCATTTCAGCTAGTACTGAAGAACAACCATTGTTTACTGGTTCTGCGTTTTCTGAGATTGGAAACCCAAGAGCACGATAG 2748 0.3544 MLFLRNFQPLINKYTLLLLSSHTTMANSVNNKNHMKITLLFLISLLYPLVANSYNPDYKLAINCGSSTNTTASDNRVWVGDDIHNSNLFTFTQPKTTNQSFNTKPNSLSNTQIPFTTARISLSNFTYSFPISINNSPVFIRLHFYSTSYQNFELSNAIFSVEVNNNLTLLKNFKPLNWATDSSIMKEYIIQIKPNDNLLNITFIPNNINQTNVSYAFVNGIEVVSMPSYLYYTNFTDGLSYHLKSLDTDAQPDYQLQNNKALEMVYRVNVGQKQVPPDQDTGMFRNWEIDYPIYLKIQYSQSISSGFGEHLNYLKNTVPNYTAPEDVYLTGRSYGKDAKEDYNVTWSFEVDSTFTYMIRLHFCEFDPKITNIGDRVFQIFIDDILAENGADVFSWSDSQILVPVHKDYAVTIYSLEGSSQIERVNISIKLQRLPNNSKQTTAYQDVILNGIEIFKISDNNNNLAGVNPKYLPIKEPLLPSPQSKSKNSTIVILIAVGVSCLLLASVVGMIVFVRRRRKFESRLEMEESSWQTKTDGSSILPSHLCRYFTIAEIRTATNNFDDIFIIGVGGFGNVYKGYIDGVIPVAIKRLKPGSQQGINEFRNEIELLSQLRHIHLVSLIGYCNDGVEMILVYDFMQRGTLREYLYGSDNELLTWKQRLEILLGAARGLHYLHTGAKQNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGMSMTHVSTVVKGSIGYLDPEYYMRQRLTLKSDVYSFGVVLLEVLCGRPPLVRSSDKKKASLVSWFQKCYKEDLIMEEMVDPFIKDSITSECLKCYCQMVLSCLHDDGNQRMSMSDLVGALEFALQLVMSEEDSKYSETQEKEKSVQRLPYQFTSDDGSDKCFTSSSDDYGSHSSKVSTISASTEEQPLFTGSAFSEIGNPRAR 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00266 915 Pfam Protein tyrosine and serine/threonine kinase 566 831 IPR001245 GO:0004672|GO:0006468
Tsu04g00266 915 Gene3D Phosphorylase Kinase; domain 1 521 635 - -
Tsu04g00266 915 Gene3D Transferase(Phosphotransferase) domain 1 636 859 - -
Tsu04g00266 915 CDD STKc_IRAK 566 833 - -
Tsu04g00266 915 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 52 858 - -
Tsu04g00266 915 ProSitePatterns Protein kinases ATP-binding region signature. 566 588 IPR017441 GO:0005524
Tsu04g00266 915 SUPERFAMILY Protein kinase-like (PK-like) 537 834 IPR011009 -
Tsu04g00266 915 SMART serkin_6 560 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00266 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 680 692 IPR008271 GO:0004672|GO:0006468
Tsu04g00266 915 Gene3D - 57 227 - -
Tsu04g00266 915 Gene3D - 260 457 - -
Tsu04g00266 915 PANTHER OS07G0166700 PROTEIN 52 858 IPR045272 GO:0004714|GO:0006468
Tsu04g00266 915 ProSiteProfiles Protein kinase domain profile. 560 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00266 915 Pfam Malectin-like domain 62 456 IPR024788 -
Tsu04g00266 915 MobiDBLite consensus disorder prediction 857 896 - -
Tsu04g00266 915 MobiDBLite consensus disorder prediction 847 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00266 Tsu-Chr4 2361203 2364123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00266 43 915 Receptor kinase-like Gene Family AT3G51550 43.326 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Tsu04g00266 Malectin_like 2e-33 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00266 - - mtr:MTR_7g015420 1165.6