Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00261 ATGTTGCCTATGCTTTTGTTTCTCCACCTATTGTTTCCTCTAGTGGTTAACTCATATGATAGTTTAGCCGTAAATTGCGGCCACTCCATAAATACTACCTTTGAAAATCGAACTTGGGTTGGCGATGTTGATGAAACCAAACTGTTCTCTATCATTGAACCACAAACCAAATTCTTATCTGTCAAAGCCAAAGTTAATACTAACTCTGATTCTGTTAAACATATTCCGTTTGCCTCTGCACGTATTTCTCAATCAAATTTCACATTCTTATTTCCTACTACCATCGACACAAATTACAGTACTCTTTTTCTTCGCCTCCATTTTTACCCAACATCGTATCAAAACTTCGAAACCTCCCAAGCTCTCTTCACCGTCAAAGTAGGAAACAACATTACCCTTCTCAAAGACTTTAATCCCTCACTTTGGCTTCAAAATGATGATGAGACCATCACCAAAGAATACTGCCTCACAACATCGGAACCAGGTGAGAAGATAAGCATAACTTTCATTCCCAACAACGAAAATCAATCAAACGCTTATGCGTTCATCAATGGAATTGAGATTGTGTCTATGCCTTCTTTTCTCTATTACACTGATCCAAATGACCTAGATTACCGTATCAAGTCACTCAACTATGACAACGCAGAATACCAAATTCTTAACGACAAAGCTTTGGAGATGGTTTATAGAGTTAACGTTGGTCTAAAACAAGTTCCACCAGACCAAGATACAGGCATGTTTCGTAATTGGGAAGTCGATTCTCCTCGTTTCTTGGAGAAAGAATATCCAGAAAGTGTATCAAGTGATTCTGGAGAACATTTAAACTATTTACACAATTCCATTCCAAACTACACTGCACCAGAAATCGTATACTTAACTGCAAGAAATTACGGAATGAATGCGACAGAGGATTATAATGTAACTTGGAATTTTGTAGTTAATTCTACTTTTAAATATATGGTAAGGTTACatttttgtgagtttgattACCATTTCAAGAAACGTGATTACAGAGTATTTCAGATTTTCATAGCTGATACTCTGGTTGAACAAAATGCTGATATAATTAATTGGAGTGGTGGTAACAAGATTCCAGTTTACAAGGATTATGCTGTGCCAAGGTACTATCTGGAAGGTAGCTCTCAAAATGAAAGAGTTAATCTTTCCATCAAGCTACAACGATTACCAGATCGTTTTGTCACAGTATATCATGATGTCATGCTGAATGGAATCGAGATTTTAAAGATAAGTGACAACAATAATCTTGCAGAGTCAATATCAAAATCGATAAATCTATCTCATCCACATCAAGGATTTTCAACCCagtcaacaaaaaaatctaAGATCACCATAGTTATTGTTGTTGCGATTGCAATTTCAAGCCTTATGCTAGCTACTGTGGTAGGCATCGCAGTGTTTTGGCTAAGGAAAAGGTTTCGTGATACCATGGAAGATAAGTCGTCAAAGACAAAGTACTACGGATCACTATCTTTTCCAGCCCATCTGTGTCGCTGCTTTACCATTGCAGAGATCAGAGCAGCCACAAACAACTTTGATGATGTTTTCATCATCGGCGTTGGAGGGTTTGGTAACGTGTACAAAGGTTTCATTGATGAATCCACACCCGTTGCGATAAAACGCCTAAAATCAGGATCCCAACAAGGTGCCAACGAGTTCATCAACGAGATCGAGTTGCTCTCTCAACTTCGCCACATTCACTTGGTATCCCTTGTCGGATATTGCAATGAAGACATGGAGATGATTTTGGTTTATGAATTCATGCAGCACGGTACTCTCTGTGAGTATCTCTATGGTTCCAATAACGAGCCACTACCATGGAAGCAGAGGCTTGAGATTTTATTGGGTGCAGCGAGAGGGCTGCATTATCTTCATGCTGAGGTGAAACACAAGATAATACATCGTGACGTGAAGAGCACTAACATATTGTTGGATGAGAAATGGGTGGCTAAGGTTTCCGACTTTGGGTTATCCAAAGTGGGACCCACGGGGATATCAACAACGCACGTCAGCACGATGGTGAAGGGGAGCCTTGGGTATTTAGATCCCGAGTACTATATGTTTCAAAGACTTACTTTGAAATCTGATGTGTACTCCTTCGGTGTGGTGCTTCTTGAGGTGTTGTGTGCTAGGCCACCTTTGGTTCGCGATTTGGATAAAAATACAGCAAGTCTAGTTTGTTGGTTTCAGAGGTGCTACAATGAAGGTGTGGCGATTGAACAAATAGTAGATTCATTCCTAAGAGATTCTATCACAAATGAGTGTTTGAAATGTTATTGCAAGTTGGCGTTGAGTTGTTTGCATGATGATGGAACTCAACGACCCACAATGAGTCAAGTGGTTGGGGATTTAGAGTTTGCGTTGCAATTGGTGGCAAGCGAAGAAGGTAGCCAGTCTGGTAATGTCCAAAAAGACAGAAGATATATGAAAGACTCACAATTCTCACAGTTTATGAGTGATGAAGAGAGTGATTTGCATTTCGTGAGATCCCACACCTACAAGGAGAGCACAGTTCCAGCATGGCCAAGTAGTCAAGAACATGCTTTCTCGGAGATTCGGAATCCAAAACCACGATCATATTCATGTTaa 2607 0.3939 MLPMLLFLHLLFPLVVNSYDSLAVNCGHSINTTFENRTWVGDVDETKLFSIIEPQTKFLSVKAKVNTNSDSVKHIPFASARISQSNFTFLFPTTIDTNYSTLFLRLHFYPTSYQNFETSQALFTVKVGNNITLLKDFNPSLWLQNDDETITKEYCLTTSEPGEKISITFIPNNENQSNAYAFINGIEIVSMPSFLYYTDPNDLDYRIKSLNYDNAEYQILNDKALEMVYRVNVGLKQVPPDQDTGMFRNWEVDSPRFLEKEYPESVSSDSGEHLNYLHNSIPNYTAPEIVYLTARNYGMNATEDYNVTWNFVVNSTFKYMVRLHFCEFDYHFKKRDYRVFQIFIADTLVEQNADIINWSGGNKIPVYKDYAVPRYYLEGSSQNERVNLSIKLQRLPDRFVTVYHDVMLNGIEILKISDNNNLAESISKSINLSHPHQGFSTQSTKKSKITIVIVVAIAISSLMLATVVGIAVFWLRKRFRDTMEDKSSKTKYYGSLSFPAHLCRCFTIAEIRAATNNFDDVFIIGVGGFGNVYKGFIDESTPVAIKRLKSGSQQGANEFINEIELLSQLRHIHLVSLVGYCNEDMEMILVYEFMQHGTLCEYLYGSNNEPLPWKQRLEILLGAARGLHYLHAEVKHKIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGISTTHVSTMVKGSLGYLDPEYYMFQRLTLKSDVYSFGVVLLEVLCARPPLVRDLDKNTASLVCWFQRCYNEGVAIEQIVDSFLRDSITNECLKCYCKLALSCLHDDGTQRPTMSQVVGDLEFALQLVASEEGSQSGNVQKDRRYMKDSQFSQFMSDEESDLHFVRSHTYKESTVPAWPSSQEHAFSEIRNPKPRSYSC 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00261 868 CDD STKc_IRAK 524 791 - -
Tsu04g00261 868 MobiDBLite consensus disorder prediction 849 868 - -
Tsu04g00261 868 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 18 853 - -
Tsu04g00261 868 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Tsu04g00261 868 Pfam Malectin-like domain 24 415 IPR024788 -
Tsu04g00261 868 Pfam Protein tyrosine and serine/threonine kinase 524 790 IPR001245 GO:0004672|GO:0006468
Tsu04g00261 868 Gene3D Transferase(Phosphotransferase) domain 1 594 819 - -
Tsu04g00261 868 SUPERFAMILY Protein kinase-like (PK-like) 496 793 IPR011009 -
Tsu04g00261 868 PANTHER OS07G0166700 PROTEIN 18 853 IPR045272 GO:0004714|GO:0006468
Tsu04g00261 868 Gene3D Phosphorylase Kinase; domain 1 479 593 - -
Tsu04g00261 868 ProSiteProfiles Protein kinase domain profile. 518 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00261 868 Gene3D - 21 192 - -
Tsu04g00261 868 Gene3D - 223 417 - -
Tsu04g00261 868 SMART serkin_6 518 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00261 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00261 Tsu-Chr4 2311541 2314242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00261 20 806 Receptor kinase-like Gene Family AT3G51550 42.840 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Tsu04g00261 Malectin_like 2.5e-29 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00261 - - mtr:MTR_7g015250 1069.68