Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00253 ATGAATTCAAAAGAAGCTGAATTTCCATTGAAACAAGAGGTCAATCATAATTCAAATGATCaacatgaaaaagaaaaggcTTCACCATCATCAAGTTCCTtagcttcatcttcatcacaatGGCCAAGATTGAAAGATCCAAGAATTGTTAGAGTATCAAGAGCCTTTGGTGGAAAAGATAGACATAGCAAAGTTTGCACAATAAGAGGATTAAGAGATAGAAGAGTAAGGCTTTCAGTTCCAACAGCTATTCAACTTTATGATCTTCAAGATAGATTAGGGCTTAATCAACCTAGCAAAGTTGTTGATTGGTTACTTAATGCAGCTAAACATGAAATTGATCAACTTCCACCACTTCCTAATTTTCCACCTATTGgaacaaatttcaattttggtttTCCATCTTCTAATGAAACCAACACTTCTCATCTTCATCAACAattgttgaatttcaataggAACAATATTCGTTGGGAAGGTGCAAGTTCAAGTCAAAATTCTAGTTGGAAATTAAACCCTAAAGAAGATTCAAGAGAAATGGTTAGTGAAAAACCAAATTATTGGATGAATAGAAGTACTCAAGAAGAGGAAAATAACAAGCAATTAGAAAGCAATATTGAAGGTACTACTCCTAGTGCAATtgttttgcaaaataataataatttgttacAAAGACCAAATCACCCTTCATTTCTTGGTTTGTTAAATAATATGCCACTTGGTACTAATTACCATTGGGGAGGAGCTTCTTCTAATGTTGTTAATTCTTCTCAATTGGGAGATAATATTGGTTTAATTACAAATCAAACCAATGATGGTAATGCAATTACATCTTTGCCACCAATGTTGTCATTATCAACTGGAAATTCTTCTCAAATGTTGTTAGGAACAACtcaatcatatttttcttcaaacGTTAATGCAATGGAGAtggatcatcatcatcatcatcaaagagAAATCAACAAccatcattatcatcaaatgTTGAGTTCATCAAATTCTCAAAATCCATTGAATAATTCTTCTCTTAACAATCCTTCCTTTAGTTTGGCTATGATGAGTACTCCCAATTTTCTACAAAGCAGCAGAGAAAATTCATCCAATAAAGAACAAGATTTTACTCCAAAGTGA 1134 0.2831 MNSKEAEFPLKQEVNHNSNDQHEKEKASPSSSSLASSSSQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDQLPPLPNFPPIGTNFNFGFPSSNETNTSHLHQQLLNFNRNNIRWEGASSSQNSSWKLNPKEDSREMVSEKPNYWMNRSTQEEENNKQLESNIEGTTPSAIVLQNNNNLLQRPNHPSFLGLLNNMPLGTNYHWGGASSNVVNSSQLGDNIGLITNQTNDGNAITSLPPMLSLSTGNSSQMLLGTTQSYFSSNVNAMEMDHHHHHQREINNHHYHQMLSSSNSQNPLNNSSLNNPSFSLAMMSTPNFLQSSRENSSNKEQDFTPK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00253 377 Pfam TCP family transcription factor 58 196 IPR017887 -
Tsu04g00253 377 MobiDBLite consensus disorder prediction 330 350 - -
Tsu04g00253 377 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
Tsu04g00253 377 MobiDBLite consensus disorder prediction 1 42 - -
Tsu04g00253 377 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 371 IPR005333 GO:0003700
Tsu04g00253 377 MobiDBLite consensus disorder prediction 162 181 - -
Tsu04g00253 377 MobiDBLite consensus disorder prediction 28 42 - -
Tsu04g00253 377 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 2 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00253 Tsu-Chr4 2241354 2243784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00253 20 130 TCP Transcription Factor Family AT3G02150 66.387 5.14e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tsu04g00253 TCP 7.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00253 - - var:108327895 318.161