Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00246 ATGGCTTCCAACAACAATATTAAAATCCATGAACACTTCAAAGTTATTCCTCCaccatcaacaaaaacaacaacaataacaccACTCACTTTCTTTGACATATTTTGGCTAAGGTTTCATCCGGTAGAAAGACTCTTCTACTACACCCTCCCAAATTCACAATCACacccttctttcttcttccaaAACATTGTTCCAAAACTCAAAACCTCACTTTCTTCAACCCTCCAACACTTTCTCCCTTTAGCCGGGAAAATTATTTGGCCTTCTGATTCTCCCAAACCGTTCATTCAATTCAATCccaatgatgatgatggtgtttCTTTGCTCATTGCAGAGTCTGATTCGGATTTCAATCATGTCATTAAAAACACACCCCAGGAAACTTCTTTGTCTCGTTCATTTGTACCTCATTTAGAATCATCAGATTCTTTTGCTTCTATTATCTCAATTCAAATAACCCTTTTTCCAAATAGTGGTTTTTCCATTGGAATAAGCACACATCATGCTGTTCTTGATGGAAAATCATCAACTATGTTCATCAAAGCTTGGGCTTATTTATGCAGCAAAATCATTGAAACCGAAGAATCGCCAAGTTTGTTGCCAAAGTTAGAACCTTTATTTGATAGGGAAATCATCAAAGATCAAAATAGTCTTGGCGATGCGTTCACAAGTAAATGGATCGAGATCATGGTCAAGATGTTCCcaaatgaaaaaagaaacaaacaaagcTTGAAGATTTTCCCTTTTGAACCAAAACTCGAAGACTATGTTCGTGCTACTTTTGAGCTCACACGTGAAGATTTGAACAAGATAAAGCAAATGGTTTTATCGAAATGGGAAATATTCGATACAAATGAAACAAAGCCTCAAACACTATCATCTTTTGTTCTCACTTGTGCTTATTCGCTCGTTTGTTTAGCAAAAGCGATTCATGGAGTTGAAAACGAGAAAGAGAAGTTTGTTATGGGGTTCAACGTAGATTGTAGAGCAAGGTTAGAGCCACAAATACCAAATAACTATTTTGGAAACTGCGTATGGGGGCATTTAGTTGATACAAAACCATTCGATTTCATAAAAGAAGATGCAGTGTTTTTAGTTGCCAAGAGTATTCATGAGAAAATAAAGGTGATTAATGACAAGGGTGTTCTAGAAGGAGctgaaaatttatttgatgattttcaaaCGATAACAAGTGAAGGATTTCAAATTATGGGATTGGCGGGGTCTAACAGATTTGGTGTTTATGAGATTGATTTTGGTTGGGGAAGGCCGGAAAAGGTGGAGATAGTATCAATTGATAGGGGTTTAACCATTGGTTTGGCTGAGAGCAAAGATGGGAGAGGTGGAGTTGAAGTTGGCCTTGTTTTGAATAAACATGCAATGGATCTCTTTAGCAAATTGTTTGTTGAAGGACTTTGTGCTAATTGA 1431 0.3417 MASNNNIKIHEHFKVIPPPSTKTTTITPLTFFDIFWLRFHPVERLFYYTLPNSQSHPSFFFQNIVPKLKTSLSSTLQHFLPLAGKIIWPSDSPKPFIQFNPNDDDGVSLLIAESDSDFNHVIKNTPQETSLSRSFVPHLESSDSFASIISIQITLFPNSGFSIGISTHHAVLDGKSSTMFIKAWAYLCSKIIETEESPSLLPKLEPLFDREIIKDQNSLGDAFTSKWIEIMVKMFPNEKRNKQSLKIFPFEPKLEDYVRATFELTREDLNKIKQMVLSKWEIFDTNETKPQTLSSFVLTCAYSLVCLAKAIHGVENEKEKFVMGFNVDCRARLEPQIPNNYFGNCVWGHLVDTKPFDFIKEDAVFLVAKSIHEKIKVINDKGVLEGAENLFDDFQTITSEGFQIMGLAGSNRFGVYEIDFGWGRPEKVEIVSIDRGLTIGLAESKDGRGGVEVGLVLNKHAMDLFSKLFVEGLCAN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00246 476 SUPERFAMILY CoA-dependent acyltransferases 291 442 - -
Tsu04g00246 476 Gene3D - 6 238 IPR023213 -
Tsu04g00246 476 Gene3D - 254 475 IPR023213 -
Tsu04g00246 476 Pfam Transferase family 17 467 - -
Tsu04g00246 476 PANTHER - 2 476 - -
Tsu04g00246 476 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 2 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00246 Tsu-Chr4 2196670 2198254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00246 22 471 Monolignol Biosynthesis Gene Families AT5G48930 25.054 5.81e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00246 - - gmx:100815354 605.52